LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod01g3075	ATGTCGAAGGTGAATGCTTTCGCTGATAAGATTGTGACTCTGCTGAAGCATTGCCACTGTAAGGTTCAGGTTCAGCAGATTCAAGCACAGCTCATCGTCCACAAGCTACACTCACACACCACCATCGCTCAGCACTTCATCTCTGCATGCGAATCCCATGGCCTTCTCAACTCCGCACTCATGCTCTTCACAGTCCTTCTTCCAAGACCCCACGTCTTCATCTGCAACTCCCTCATCAGAGCCTTCTCCCACTCCCAAATCCCTCACACCCCACTTTCCATTTACACCCGCGTCATGCACCACAACTCCATCGTCCCCAACAACTTCACCTTCCCCTTCCTCTTCAAGTCCTTGTCTGACTCACGTGACTTCGTTCATGCACAGTGTGTCTATGCCCATGTTGTCAAGCTGGGTCATTTGAATGATGTTTACGTGCAAAACTCGGTTCTTGATGTGTATGCTTCGTGTGGTTATATGGGGTTGTGTCAGCGACTGTTTGATGAAATGCTTCAGAGGGATGTTGTTTCTTGGACCGTCATGATTATGGGGTACAGGAATGTTGGGAAGTATGATGATGCTTTGCTTGTGTTTGAACAGATGCAGTATGCGGGTGTGGAGCCCAATAGGGTGACAATGGTGAATGCCTTGGCCGCTTGTGCTAATTTTGGTGCTATTGAGATGGGGACTTGGACACATGACATCATAAGGAGGAATGGGTGGGAATTGGATGTCATATTGGGGACCGCCTTGATCGAGATGTACGCGAAATGCGGAAAAGTTGAAGAGGGGATGGGTGTTTTTAGAAGCATGAAGGAGAAGAATTTGTATACTTGGAATGCAGTTATCAAAGGGCTTGCTTTGGCTAAGAGTGGGGAGGAGGCAATTTGGTGGTTTGACAGAATGGAGAAGGATGGACTTAGACCAGATGAGGTGACTGTCGTTGCAGTTCTTTCTGCTTGTAGTCACTCAGGCTTGGTAGAGACGGGTAGACAAATCTTCAGTTTTTTGGTTAGTGGGAAGTATGGATTTTATCCAAATGTCAAGCACTATGCTTGTATGGTTGACCTCTTAGCGCGTTCTGGGCGGTTGCAAGAGGCTTTTGAGTTCATGAGACGTATGCCTATTGAGCCGACAAAAGCCATGTGGGGATCCTTGTTGGCTAGTTCAAAATCTCAGGGTGAATTGGAATTCAGTGAGTTTGCAGCCAGAAAACTAGTTGAATTGGAGCCAGATAACACTGCCTATTATGTTCATCTGTCTAATCTGTATGCAGAGATGGGAAGATGGAGCGATGTTGAGAAAGTGAGGAGAATGATGAAAGACAGACAACTGACCAAGGACTTGGGGTGCAGTTCTGTGGAGGTTGAATGCCAAGGACATGTAAACGAACTCCTGGCATAG	1401	0.4697	MSKVNAFADKIVTLLKHCHCKVQVQQIQAQLIVHKLHSHTTIAQHFISACESHGLLNSALMLFTVLLPRPHVFICNSLIRAFSHSQIPHTPLSIYTRVMHHNSIVPNNFTFPFLFKSLSDSRDFVHAQCVYAHVVKLGHLNDVYVQNSVLDVYASCGYMGLCQRLFDEMLQRDVVSWTVMIMGYRNVGKYDDALLVFEQMQYAGVEPNRVTMVNALAACANFGAIEMGTWTHDIIRRNGWELDVILGTALIEMYAKCGKVEEGMGVFRSMKEKNLYTWNAVIKGLALAKSGEEAIWWFDRMEKDGLRPDEVTVVAVLSACSHSGLVETGRQIFSFLVSGKYGFYPNVKHYACMVDLLARSGRLQEAFEFMRRMPIEPTKAMWGSLLASSKSQGELEFSEFAARKLVELEPDNTAYYVHLSNLYAEMGRWSDVEKVRRMMKDRQLTKDLGCSSVEVECQGHVNELLA*	467

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod01g3075	466	PANTHER	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	2	457	-	-
	Dod01g3075	466	TIGRFAM	PPR: pentatricopeptide repeat domain	276	310	IPR002885	-
	Dod01g3075	466	TIGRFAM	PPR: pentatricopeptide repeat domain	248	275	IPR002885	-
	Dod01g3075	466	TIGRFAM	PPR: pentatricopeptide repeat domain	175	208	IPR002885	-
	Dod01g3075	466	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	243	273	IPR002885	-
	Dod01g3075	466	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	346	380	IPR002885	-
	Dod01g3075	466	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	173	207	IPR002885	-
	Dod01g3075	466	PANTHER	-	2	457	-	-
	Dod01g3075	466	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	274	308	IPR002885	-
	Dod01g3075	466	Pfam	PPR repeat family	172	219	IPR002885	-
	Dod01g3075	466	Pfam	PPR repeat family	273	321	IPR002885	-
	Dod01g3075	466	Coils	Coil	461	466	-	-
	Dod01g3075	466	Gene3D	Tetratricopeptide repeat domain	226	340	IPR011990	GO:0005515
	Dod01g3075	466	Gene3D	Tetratricopeptide repeat domain	139	225	IPR011990	GO:0005515
	Dod01g3075	466	Gene3D	Tetratricopeptide repeat domain	19	138	IPR011990	GO:0005515
	Dod01g3075	466	SUPERFAMILY	TPR-like	184	436	IPR011990	GO:0005515
	Dod01g3075	466	Pfam	E motif	394	454	IPR046848	-
	Dod01g3075	466	Gene3D	Tetratricopeptide repeat domain	344	441	IPR011990	GO:0005515
	Dod01g3075	466	Pfam	PPR repeat	350	373	IPR002885	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod01g3075	Dod-Chr1	71462155	71464475	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod01g3075	92	455	Glycoside Hydrolase	AT3G49170	32.418	1.27e-66	227

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod01g3075	-		-	lja:Lj0g3v0239469.1	693.345