Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3054 ATGAGTAGCTTAATGGCGAGCTTCACAGCTCGCATATGCGCTTCGTGCAGCAACCTATTACTCCCCATACGACGTCGTCCCCTTCACCAATTCACCAATACACGCGTCACTCTTCTTCCCCTCAGACCCTCAACACCAACCACTATCACCTGCATGGCGGAACCTTATCTTATAACGAAGCTGGAATCCGCGGAGAAGACCTGGAAAGAATTATCGGTTAAGCTTGCTGACCCAGATGTTGTGTCTAATCCTAGTGAGTACCAAAAATTGGCACAATCTGTGGCAGAGCTTGATGAGGTTGTGTCCACGTATAGGAGGTTTAAAGACTGTGAGAAGCTTCTAGAAGAAACCAAAGCTTTAGCAAAGGATGATGGTAATGATGAGGATATGGCGGAAATGATATCTTATGAAATAGATTCTCTGTCCAAGCAACTCACAGAGCTTGAGGACAAGCTTAAGGTGTTACTGCTTCCCAGTGATCCTCTGGATGCAAGAAACATATTGCTTGAAGTACGAGCAGGTACTGGTGGTGACGAGGCTGGAATTTGGGCTGGTGATCTTGTCCGAATGTATGAAAAATATAGTGAACTGAACTCTTGGAAGTATTCTCTTGTCTCAAGCTCCGCGGCAGAAAAAGGAGGTTACAAAACTTATGTGATGGAGATAAAAGGAAACCGTGTCTACAGTAAATTAAAATATGAATCTGGTGTCCACCGAGTTCAACGTGTTCCTCTAACAGAGACACAGGGCAGGGTACATACTTCTACTGCAACAGTGGCCATTATGCCAGAGGCTGATGAAGTTGAAGTGGTAATCGACCCAAAAGATATTGAACTGACAACAGCACGTTCTGGGGGTGCTGGAGGCCAGAATGTTAACAAGGTTGAAACAGCCATTGATCTTTTTCATAAACCAACGGGAATCCGCATCTTCTGTACTGAAGAAAGGACTCAACTTCAGAACAAGAATCGTGCTTTTCAGTTGCTCCGTGCAAAATTATATGAGATGAAGGTAAGGGAGCAGCAAGAGTCAATACGAAATCAAAGGAAATCACAGGTTGGTACAGGTGCCCGTGCAGAAAAAATTCGGACATATAATTATAAGGACAACAGGGTTACTGACCACAGATTGAAGATGAACTTTGAGCTGACCTCTTTTCTTAATGGTAACATAGAAGATGCTGTTCAGTCTTCTGCTGCAATGGAGCAAAAGGAGCTGCTGGAAGAACTAGCTGAATCTATAGGTGCTCCAGCTGGCTGA 1260 0.4429 MSSLMASFTARICASCSNLLLPIRRRPLHQFTNTRVTLLPLRPSTPTTITCMAEPYLITKLESAEKTWKELSVKLADPDVVSNPSEYQKLAQSVAELDEVVSTYRRFKDCEKLLEETKALAKDDGNDEDMAEMISYEIDSLSKQLTELEDKLKVLLLPSDPLDARNILLEVRAGTGGDEAGIWAGDLVRMYEKYSELNSWKYSLVSSSAAEKGGYKTYVMEIKGNRVYSKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLQNKNRAFQLLRAKLYEMKVREQQESIRNQRKSQVGTGARAEKIRTYNYKDNRVTDHRLKMNFELTSFLNGNIEDAVQSSAAMEQKELLEELAESIGAPAG* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3054 419 SMART PCRF_a_2 119 234 IPR005139 GO:0006415
Dod01g3054 419 Hamap Peptide chain release factor 1 [prfA]. 57 411 IPR004373 GO:0006415|GO:0016149
Dod01g3054 419 SUPERFAMILY Release factor 66 407 IPR045853 -
Dod01g3054 419 Gene3D - 50 161 - -
Dod01g3054 419 PANTHER PEPTIDE CHAIN RELEASE FACTOR APG3, CHLOROPLASTIC 8 417 - -
Dod01g3054 419 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 283 299 IPR000352 GO:0003747|GO:0006415
Dod01g3054 419 Gene3D - 330 413 - -
Dod01g3054 419 TIGRFAM prfA: peptide chain release factor 1 53 412 IPR004373 GO:0006415|GO:0016149
Dod01g3054 419 Coils Coil 131 151 - -
Dod01g3054 419 Pfam RF-1 domain 266 376 IPR000352 GO:0003747|GO:0006415
Dod01g3054 419 Pfam PCRF domain 65 259 IPR005139 GO:0006415
Dod01g3054 419 Gene3D - 163 272 - -
Dod01g3054 419 PANTHER LD18447P 8 417 - -
Dod01g3054 419 Gene3D - 273 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3054 Dod-Chr1 71247929 71253015 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3054 K02835 - gmx:100777225 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3054 01 71247929 71253015 Dod01g3054 01 71247929 71253015 ECH