Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3017 ATGGGCGCCAATTCCTTGCCATCCGAGTCTACTCACGATCTCGACGAGCAGATCTCGCAGCTCATGCAGTGCAAGCCACTATCCGAGCAACAGGTTAGAGTTTTATGTGAGAAAGCTAAGGAGATTTTAATGGATGAAAGTAATGTCCAGCCTGTGAAAAGCCCTGTGACAATTTGTGGCGATATTCATGGGCAGTTTCATGATCTTGCTGAACTATTTCGAATTGGAGGGAAGTGTCCAGATACTAACTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAGACTGTAACACTGCTTGTGGCACTGAAAGTGCGGTATCCTCAACGAATAACCATTCTTAGAGGAAACCATGAAAGCCGTCAGATCACTCAAGTATATGGATTTTATGATGAATGCCTAAGAAAGTATGGTAATGCTAATGTCTGGAAGATCTTTACAGACCTTTTTGATTTTTTTCCGCTGACTGCATTGGTTGAATCTGAAATATTCTGTCTGCATGGTGGATTGTCGCCTTCAATTGAGACCCTTGATAACATAAGGAACTTCGATCGTGTTCAAGAGGTTCCCCATGAAGGGCCCATGTGTGATCTCTTGTGGTCTGATCCGGATGACAGATGCGGCTGGGGAATTTCTCCTCGTGGTGCTGGATATACTTTTGGCCAGGATATATCTGAACAATTTAATCACACAAACAGTCTTAAGTTGATTGCTAGAGCTCATCAGCTGGTTATGGATGGATTTAACTGGGCTCATGAACAAAAGGTGGTTACAATTTTCAGTGCACCTAACTATTGTTACCGGTGTGGGAACATGGCTTCCATATTGGAGGTTGATGATTGCAAGGGCCACACTTTTATCCAGGTCTCTCTGTCATACAACATTGTTTGCTCTTGTTTTGCTTGGTTAAATGTTAACTTTGGTCCTGTCCCTTGGATTGTCTCTCTGCAAATTTGA 969 0.4283 MGANSLPSESTHDLDEQISQLMQCKPLSEQQVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQVSLSYNIVCSCFAWLNVNFGPVPWIVSLQI* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3017 322 CDD MPP_PP2A_PP4_PP6 13 292 - -
Dod01g3017 322 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 1 294 - -
Dod01g3017 322 Pfam Calcineurin-like phosphoesterase 55 246 IPR004843 GO:0016787
Dod01g3017 322 Gene3D - 7 299 IPR029052 -
Dod01g3017 322 SMART pp2a_7 27 297 IPR006186 GO:0016787
Dod01g3017 322 SUPERFAMILY Metallo-dependent phosphatases 9 296 IPR029052 -
Dod01g3017 322 ProSitePatterns Serine/threonine specific protein phosphatases signature. 118 123 IPR006186 GO:0016787
Dod01g3017 322 PRINTS Serine/threonine phosphatase family signature 237 257 IPR006186 GO:0016787
Dod01g3017 322 PRINTS Serine/threonine phosphatase family signature 117 141 IPR006186 GO:0016787
Dod01g3017 322 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Dod01g3017 322 PRINTS Serine/threonine phosphatase family signature 84 111 IPR006186 GO:0016787
Dod01g3017 322 PRINTS Serine/threonine phosphatase family signature 152 178 IPR006186 GO:0016787
Dod01g3017 322 PRINTS Serine/threonine phosphatase family signature 181 208 IPR006186 GO:0016787
Dod01g3017 322 PRINTS Serine/threonine phosphatase family signature 259 275 IPR006186 GO:0016787
Dod01g3017 322 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-4 CATALYTIC SUBUNIT 1 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3017 Dod-Chr1 70895522 70905464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3017 19 243 Calmodulin-binding Proteins AT5G63870 34.457 1.89e-32 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3017 K04382 - thj:104821037 601.282