Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3006 ATGTACTGTAATGGTATGGAGAATCTGCAGGGAAACAGTATTAATTTTGACACATTCACGTGGAAAATTGAGAATTTCACAAAACAAAACACCAAGAATCTACGATCCAAGGGTTTCCGAATAAGAGATCATAAATGGCGGATCCGTTTGTATCCATTAAGGAAGGATGTTAACCATTTTTCGTTGTACTTGATGGTTGCTGATTCTTTACCAGCGTATGGATGGACCAGAAACACACATTTCAAGTTGATTCTGATTAATCAGGTTGATGGCAATAAGTCAATTGTAAAAGCTATTGGAATGGAGAATCAGCAGGGAAAAAGGATGGCTTTTGAGAAATTGACATGGGTAATTGAAAGTTTCACAAAGAAGAACACCAGGAAGCTACACTCCAAGTCTTTCCGAGTCGGTGGCTGTAGATGGAAGACTATTTTATATCCTAAGGGAAAGGACGAGGAGCACTTGTCCTTGTGTATGAAGGTTGCCGATTCCCTTCCACCATATGGATGGAGCAGATTTGTATATTTCAGATTGACTCTTATAAATCAGGTGGATAGCAAGAAGTCAATTGTAAAGGTCTCCAAGACTGCATTCAACCTTCCGGACAACGTGGGCCAAAGCACTACAACAACCCATGAATCCAGTGCTAATTTCCAACCAAGGCTAGCAGAAGCAAAACTCAGAGAGCATGCGCAGGAAGATCAAGGAATGACACCTTCAGATATTAAGAGACAACAATTTAAATCCTAA 750 0.4013 MYCNGMENLQGNSINFDTFTWKIENFTKQNTKNLRSKGFRIRDHKWRIRLYPLRKDVNHFSLYLMVADSLPAYGWTRNTHFKLILINQVDGNKSIVKAIGMENQQGKRMAFEKLTWVIESFTKKNTRKLHSKSFRVGGCRWKTILYPKGKDEEHLSLCMKVADSLPPYGWSRFVYFRLTLINQVDSKKSIVKVSKTAFNLPDNVGQSTTTTHESSANFQPRLAEAKLREHAQEDQGMTPSDIKRQQFKS* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3006 249 SUPERFAMILY TRAF domain-like 18 97 - -
Dod01g3006 249 ProSiteProfiles MATH/TRAF domain profile. 16 133 IPR002083 GO:0005515
Dod01g3006 249 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 111 199 - -
Dod01g3006 249 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 16 96 - -
Dod01g3006 249 MobiDBLite consensus disorder prediction 202 218 - -
Dod01g3006 249 MobiDBLite consensus disorder prediction 223 237 - -
Dod01g3006 249 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 111 221 IPR008974 GO:0005515
Dod01g3006 249 CDD MATH 18 97 IPR002083 GO:0005515
Dod01g3006 249 SMART math_3 18 144 IPR002083 GO:0005515
Dod01g3006 249 MobiDBLite consensus disorder prediction 202 249 - -
Dod01g3006 249 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 111 199 - -
Dod01g3006 249 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 16 96 - -
Dod01g3006 249 SUPERFAMILY TRAF domain-like 113 202 - -
Dod01g3006 249 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 7 110 IPR008974 GO:0005515
Dod01g3006 249 CDD MATH 113 205 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3006 Dod-Chr1 70758298 70771567 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3006 K11838 - gmx:102668708 156.762