Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3000 ATGAAATTCGGGTGCGTATTCACGGAGTACCTGCAGGAAGAGCGGGAATTGTTGTTGGACGACAAGTGTGCGCACATCGAATATGTGAGGTTGAAGAAAGTGTTGAAGAGTTGCCAGACCTCTGATTCTGATCTTCTGCCCAAAGACCAGCCGTGTGAATGTCAATCCTGCCCAGTGTGCGATCAAAAGTTCTTCTCTGAGCTGATGAAGGAAGCATCAGATATAGTTGGATACTTCAGTTCAAGAGTTAGGCACCTTCTCCATCTTCATATTGCGACAGGAATGCAGAGATATGTATTGCGCTTGCGTCAGTGCTTTAAAAATGATAGGCAAGCCATTGCACAAGAAGGGAGAATTTTAATTGAGTACATTGCAATGAATGCTATTGCCATGAGGAAAATACTTAAGAAATATGATAAAGTCCACAGCTCTGTTAATGGGGAGAATTTCAAATCTAGGATGCATGCTGAACACATCGAACTTTTACACTCACCTTGGCTAATTGAATTGGGTGCTTTTTATCTGAATTCTAGCGGGCTAGATGGTTGTGAGCTTGATGGAGTGTATGGTCGCTTTTTGTGTGACCTAAACCTAACAGAAGCCATAATGACCTTGGTTCTTCCAGATTCTATTAAGCTTGAGTATGATCTAACTTGTGCAATTTGCCTGGAATTTGTTTTCAACCCATATGCTTTGGGTTGTGGTCATATCTTCTGCAAGTCATGTGCTTGCTCAGCAGCCTCTGTGATGATTTTCCAAGGCCTTAAATCTGCAAGTCCGGAGTCAAAGTGTCCCATATGCAGAGAGGTTGGGGTTTATTCAAAGACAGTGCGCATGTTAGAACTTGATCTGCTTATGAAAACAAGGTGCAAAGAATACTGGAAAGAGAGGCTAGCTGGGGAACGAAGTGAAATGTTGAAGCAATCCAAGGAATACTGGAATTCACAGTCAGCATATGCAATTGGAATACACTAG 975 0.4236 MKFGCVFTEYLQEERELLLDDKCAHIEYVRLKKVLKSCQTSDSDLLPKDQPCECQSCPVCDQKFFSELMKEASDIVGYFSSRVRHLLHLHIATGMQRYVLRLRQCFKNDRQAIAQEGRILIEYIAMNAIAMRKILKKYDKVHSSVNGENFKSRMHAEHIELLHSPWLIELGAFYLNSSGLDGCELDGVYGRFLCDLNLTEAIMTLVLPDSIKLEYDLTCAICLEFVFNPYALGCGHIFCKSCACSAASVMIFQGLKSASPESKCPICREVGVYSKTVRMLELDLLMKTRCKEYWKERLAGERSEMLKQSKEYWNSQSAYAIGIH* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3000 324 ProSiteProfiles Zinc finger RING-type profile. 219 268 IPR001841 -
Dod01g3000 324 CDD SPX_BAH1-like 2 147 - -
Dod01g3000 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1-LIKE-RELATED 1 322 - -
Dod01g3000 324 ProSiteProfiles SPX domain profile. 1 152 IPR004331 -
Dod01g3000 324 SMART ring_2 219 267 IPR001841 -
Dod01g3000 324 ProSitePatterns Zinc finger RING-type signature. 234 243 IPR017907 -
Dod01g3000 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 317 IPR013083 -
Dod01g3000 324 SUPERFAMILY RING/U-box 211 270 - -
Dod01g3000 324 Pfam RING-type zinc-finger 219 265 IPR027370 -
Dod01g3000 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 322 IPR033326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3000 Dod-Chr1 70695377 70698790 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3000 K16275 - gmx:100781704 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3000 01 70695377 70698790 Dod01g3000 01 70695377 70698790 ECH