Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2977 ATGACCCGATTTTACGAGAAGCTCCGTTTGCGTTCGTTGGTGGTGAAACCGACCCGCTTTCTCGCTCTAGTTTCTCTCTCCACCCTTGTCAAGCTCTGCAAGTCCCTCGCTCGCTTCCTCCTCTCCCAAACCCTACCTTTCGTCTCCATGGACAACCTCTTCGCCGACCACCCCGAATACTTCTGCGACGACTTCGACTCCTCCTCCTCCTCCTCCCTCCACCTCCGCCCCCACCGCCGCTCCGACGACCGCGATCACCCCCTCGACAGGGTTTACTTGCTCCCCTACAGATGGTGGATTGAGGCGGAAGGTGAAGGTGATCGTGTGGAAGGTGTATTGTACACAGTGTCGTCGAATTCTGATTACGAGGCTCAGATTTTGCTTCATTTGAGGAAGGAAGAGGACCGCGACAAGATTATGGATTTGGAGGTAGGGTTTTCTGGTCGCCAATATGCCTTGGTTCCTGAAGGGATTTGGTTGCGTGCACTCAAACGGTATAATGACTTTAATAACCATGTGAAAGATTTTGGGAGCCTCTTCTTTGGAGAACACTGTTTGTCAGATTTATTCCCCTTGCAAGTTAGGATTTTTGTTTCATGGGAAACAAATTCACTGGTAGCAAAGATAAGCCAAAAGGAAAATGCAGCCGAATTCTACAAAAAAGCTTCTGACATATTCAATTCTGAGCATAATCCCGTGCATATTTGGGACTTTTCTGGGCAGACAACCCAGTTATTCATGAATGACAAAGTTAGGTTGCCAAATGATTCTGCTGGTCAACCTGGAAGAGAGGTTCTTCTGGAGTTGCAAGTTCATGGACTTTCAGATTCTAGGCAGGGTAATGGAAGTAACGAGATGATTGCAGATAGGTCTCAGATGGCATGTTCTTCTCACAGTGGCCCCATTATGATGAATGGAAGGACTGACAATGTGATCTCCAATGTATCAGCAGCAACAAACTCCTTTCGCTGTGGTTGCTATCGAGAAGTTCGAACTTTGGGCTTGACAGGATTACAGAATCTTGGAAATACTTGTTTCATGAATAGTGCTATTCAGTGTTTGGCTCATACACCAAAGCTTGTTGATTTTTTCCTTGGAGATTACCGTAAAGAGATAAATTATGAAAATCCCTTGGGAATGAATGGAGAACTTGCTTCAGCTTTTGGGGACTTACTGAGAAGGCTGTGGGTTCCTGGAGCAAGGCCTGTGGTACCAAGAATGTTCAAAATGAAACTCGCTAATTTTGCTCCTCAGTTTAGTGGTTATAGCCAGCATGACTCTCAAGAACTTCTGGCTTTTTTGTTGGATGGCCTGCATGAAGACCTCAATCGCGTAAAACGCAAGCCATATCATGAAGTTAAGGATGCAGATGGCCGCCCAGATGAAGAAGTGGCTGAAGAGTACTGGCGAAATCACCTTGCTCGCAATGATTCCATAGTAGTTGATTTGTGCCAAGGTCAGTTTCGATCAACATTGGTTTGCCCTATCTGCAAGAAGGTCTCTATCACATTTGACCCTTTTATGTATTTATCTCTTCCTTTGCCATCTACAACAATGCGGACCATGACTTTGACTGTCATGAGCACTGATGGGATTACACTGCCTTCTACATGTACCGTAACACTGCCCAAAAGTGGAAGGCTTAAGGATCTTATTGAGGCCTTGAGTACTTCTTGTTCTCTAAGAGATGATGAAACCCTCCTGGTGACTGAGATATACAGGCATCAGATTTTTCGGGTATATGATGATCCATCTGATTCATTATCAGAAATTAGAGATCAAGACATACTTGTTGCATATCGGATACAAAAATATAATGAAGCTAGTCCCTTGGTTTTTTTCTCACATAAACGTTTGGTGGAAAATTCTGGGAAGGACAGGTTTGAAACTCTGTTTGGTGTTCCACTTGTAGCAAGGTTGTCCAGTATTTATTTTGGAAATGATGTTCGTAGGGAGTTTCTGAAGTTAATCAATCCATTTCTGATGTGCTCTGAAGATATACTTGATGAGTTTGATGATGACGATGATGTCAATAGAAAACTTAGTGAAGATGACGAATTGGGAGATGCTACTAGCTCTGCAGCAATAGGAAGTGACGCAGACTCAACCAGTGGAACGGAGGATGACATACAGTTGTGGGCTGACTTTGAATTCAGCTTATGTTATGCGCAAGGATCAGAGAATGTAGAGATAAAATTGAACGAACCATTACCAGGCACAATGTTGCCTAAGAAGCTGGAAGTGGTTGTCTTGTGGTCAGATAAGATGCTTAAGAGATATGATACGTACCTGCTTGACACATTGCCTGAGGTTTTCAAGCCCCAGCTGTTCACCAAGAGAACACAAGAGTCAGTTTCTATTTACAAGTGCCTTGAAGCCTTCTTGAAAGAGGAACCTCTAGGGCCACAAGACATGTGGTACTGCCCTACCTGCGAAAAACCCCAGCAAGCAGCTAAAAAACTGGATCTTTGGAGATTGCCTGAAATCCTTGTTGTTCATTTGAAGAGGTTCTCATACAGCCGGTTCTTCAAGAACAAGCTGGAAACATTTGTAGACTTCCCCATTAATGATCTGGACATGTCAACATACGTTGCCCACCGGAAGAGTCAGTCTTCCCACTGGTATATGTTGTATGCAATTAGTTGTCACTATGGAGGGTTAGGAGGAGGCCACTATACAGCATTTGTCCGTTATGGCCATGATAAATGGTATGAGTTTGATGATAGCAGGGTTGCCCCTGCCAGTGAGGACATGATAAAGACTTCTGCTGCTTATGTGCTTTTCTACAGGAAAGTTTAG 2799 0.4416 MTRFYEKLRLRSLVVKPTRFLALVSLSTLVKLCKSLARFLLSQTLPFVSMDNLFADHPEYFCDDFDSSSSSSLHLRPHRRSDDRDHPLDRVYLLPYRWWIEAEGEGDRVEGVLYTVSSNSDYEAQILLHLRKEEDRDKIMDLEVGFSGRQYALVPEGIWLRALKRYNDFNNHVKDFGSLFFGEHCLSDLFPLQVRIFVSWETNSLVAKISQKENAAEFYKKASDIFNSEHNPVHIWDFSGQTTQLFMNDKVRLPNDSAGQPGREVLLELQVHGLSDSRQGNGSNEMIADRSQMACSSHSGPIMMNGRTDNVISNVSAATNSFRCGCYREVRTLGLTGLQNLGNTCFMNSAIQCLAHTPKLVDFFLGDYRKEINYENPLGMNGELASAFGDLLRRLWVPGARPVVPRMFKMKLANFAPQFSGYSQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDEEVAEEYWRNHLARNDSIVVDLCQGQFRSTLVCPICKKVSITFDPFMYLSLPLPSTTMRTMTLTVMSTDGITLPSTCTVTLPKSGRLKDLIEALSTSCSLRDDETLLVTEIYRHQIFRVYDDPSDSLSEIRDQDILVAYRIQKYNEASPLVFFSHKRLVENSGKDRFETLFGVPLVARLSSIYFGNDVRREFLKLINPFLMCSEDILDEFDDDDDVNRKLSEDDELGDATSSAAIGSDADSTSGTEDDIQLWADFEFSLCYAQGSENVEIKLNEPLPGTMLPKKLEVVVLWSDKMLKRYDTYLLDTLPEVFKPQLFTKRTQESVSIYKCLEAFLKEEPLGPQDMWYCPTCEKPQQAAKKLDLWRLPEILVVHLKRFSYSRFFKNKLETFVDFPINDLDMSTYVAHRKSQSSHWYMLYAISCHYGGLGGGHYTAFVRYGHDKWYEFDDSRVAPASEDMIKTSAAYVLFYRKV* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2977 932 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53 932 - -
Dod01g2977 932 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 875 892 IPR018200 GO:0004843|GO:0006511
Dod01g2977 932 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53 932 - -
Dod01g2977 932 MobiDBLite consensus disorder prediction 679 705 - -
Dod01g2977 932 Gene3D Cysteine proteinases 753 932 - -
Dod01g2977 932 CDD Peptidase_C19R 785 930 - -
Dod01g2977 932 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 336 932 IPR028889 -
Dod01g2977 932 Gene3D Cysteine proteinases 327 573 - -
Dod01g2977 932 SUPERFAMILY Cysteine proteinases 334 931 IPR038765 -
Dod01g2977 932 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 337 352 IPR018200 GO:0004843|GO:0006511
Dod01g2977 932 Pfam Ubiquitin carboxyl-terminal hydrolase 336 929 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2977 Dod-Chr1 70424560 70431286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2977 783 932 Miscellaneous Gene Families AT2G24640 32.026 4.90e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2977 - K21343 cam:101507058 1436.01