Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2918 ATGGCGGGCTCATCAACCTCTGCAGTCAAAAGGCTAGAAGGAAAAGTAGCACTGATAACAGGAGGAGCAAGCGGGATCGGGAAACGCACCGCAGAAGTATTCGCGGAGCAGGGAGCCAAAGTAGTGATCGCAGACATCCAAGACGAACTGGGCCATTCCGTGGCCCAATCCATAGGCCCATCGACGTGCACCTACGTCCACTGCGACGTCACCGATGAGGACCAAGTCAAACGCGCCGTTTCCACCGCCGTTGAAACCTACGGGAAGCTGGACATCATGTTCAACAACGCAGGCATATCCGACCCAAACAAGCCCCGAATCATCGACAACGACAAGGCTGATTTCGAGCGCGTGCTGAGTGTCAACGTCACGGGCGTTTTCCTAGGAATCAAGCACGCGTCACAGGCCATGATCAAGGCGCGTGGTGGGAGCATCGTTTCCACGGCTAGCATAAGCTCCTACGTTGGCGGTGCTGCCTCCCACGCATATTGTTGTGCCAAACACGCCGTTGTTGGCCTCACCAAGAATGCTGCGGTTGAGCTTGGGCAGTTTGGGATCAGGGTGAATTGCTTGTCGCCTTACGCGCTTGCGACTCCTTTGGCTACAAAGTTTGTTGGGGTGAGTGATGAGGAGCTTGAGGGTGTGATGGACTCGCTGGCGAATCTTAAGGGTGTGACCCTTAAGGCTGATGATGTGGCCAACGCGGCGCTTTATTTTGCGAGTGATGATTCGGGGTATGTGAGTGGGCAGAACCTGCTCATTGATGGGGCTTTCAGCATTGTTAATCCCTCCTTTCACATGTTTCAGTACCCGGAGCCCTGA 822 0.5474 MAGSSTSAVKRLEGKVALITGGASGIGKRTAEVFAEQGAKVVIADIQDELGHSVAQSIGPSTCTYVHCDVTDEDQVKRAVSTAVETYGKLDIMFNNAGISDPNKPRIIDNDKADFERVLSVNVTGVFLGIKHASQAMIKARGGSIVSTASISSYVGGAASHAYCCAKHAVVGLTKNAAVELGQFGIRVNCLSPYALATPLATKFVGVSDEELEGVMDSLANLKGVTLKADDVANAALYFASDDSGYVSGQNLLIDGAFSIVNPSFHMFQYPEP* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2918 273 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Dod01g2918 273 PRINTS Glucose/ribitol dehydrogenase family signature 137 153 IPR002347 -
Dod01g2918 273 PRINTS Glucose/ribitol dehydrogenase family signature 184 201 IPR002347 -
Dod01g2918 273 PRINTS Glucose/ribitol dehydrogenase family signature 16 33 IPR002347 -
Dod01g2918 273 PRINTS Glucose/ribitol dehydrogenase family signature 163 182 IPR002347 -
Dod01g2918 273 PRINTS Glucose/ribitol dehydrogenase family signature 222 242 IPR002347 -
Dod01g2918 273 Gene3D - 2 269 - -
Dod01g2918 273 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 261 IPR036291 -
Dod01g2918 273 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 7 269 - -
Dod01g2918 273 PANTHER SECOISOLARICIRESINOL DEHYDROGENASE-LIKE 7 269 - -
Dod01g2918 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 IPR002347 -
Dod01g2918 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
Dod01g2918 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 IPR002347 -
Dod01g2918 273 Pfam Enoyl-(Acyl carrier protein) reductase 21 256 - -
Dod01g2918 273 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 150 178 IPR020904 GO:0016491
Dod01g2918 273 CDD secoisolariciresinol-DH_like_SDR_c 11 259 IPR045309 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2918 Dod-Chr1 69619223 69620694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2918 12 273 Acyl Lipid Metabolism Gene Families AT1G63380 29.520 3.28e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2918 - - gmx:100802915 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2918 01 69619223 69620694 Dod01g2918 01 69619223 69620694 ECH