Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2889 ATGACCGAAGTGCTCCAATCCCCATCTCATTTGCCTTCACCTTCAAGCTGTTCGAGCAGTCCTTGTGGTGGGTCGCACCAAAGTGCCCTTATTAACAGCCCCAACACAGTGGAGGTCGTTGAAGGGGTGGTTCAGTCCCATTTGGATTTGGGCAGAGTCACAGAAGAAACAGGGGAGGAAGAAGAAGAAGAAGAAGAAGGGGTAAAGGCGGAAAAGGACAGAGAGGGAGATCAGCTTTCTATTTTGACACTCTTGATTGCTACTTTTAGGAAATCTTTGATAGGGTGCAGTGCTAGCAGTGGAGACATCTCTTCTTCTTCTTCGATGGAGATTGGGTGGCCTTCCAATGTGAGACACGTGGCACATGTAACCTTTGATCGATTCCATGGCTTTCTTGGCTTGCCTGTTGAGTTTGAACCCGAGGTTCCCCGAAGGCCTCCCAGCGCAAGTGCAAATGTTTTTGGGGTTTCAACAGAATCTATGCAGCTTTCTTTTGATGCTAGAGGAAATAGTGTACCAACAATACTGCTGTTAATGCAAAGACATTTGTATGCACAAGGAGGCCTGCAGGCTGAAGGAATCTTCAGAATTAATGCTGAAAATAGTCAAGAGGAGTTTGTACGGGAACAGTTAAACAGAGGAGTAGTACCTGAAGGCATTGACGTGCACTGTTTGGCAGGTCTTATAAAGGCTTGGTTCAGAGAACTTCCAACTGGGGTATTGGATCCGCTTTCACCCGAGCAGGTGATGCAGTCCCAGTCAGAAGAAGAATGTTCTCAGCTTGTAAGGCTTCTTCCTCCAACAGAAGCTGCTTTGCTTGATTGGGCAATAAACTTGATGGCTGATGTTGCTCAACTAGAACATCTGAACAAGATGAATGCACGCAATGTTGCAATGGTTTTTGCACCAAACATGACTCACATGACAGATCCTTTGACTGCTTTGATGTATGCAGTACAAGTCATGAATTTCCTCAAGACTCTTGTGGTTAAGACACTGAGAGAAAGAGAGGAGTCTATGGTAAAATCAAATCCCGTTTCCAACCTAAACACTTTTGATGATGATGGGCACCACAGCTCTTCACAACTGATTCTCACAGATGACAGTGAAAATGGAAAGGATAGTAGTGATGAGGATGCAGAATTTGTTACTGAAGAACCTTCTCAACAAAGCCCTAGTCACGTTATGGAAGATGGCTGCAGAAGTGAAAGTGGATCCAAAAGTTTGCCAACATCAACTGAAAAATTCGTTTCTAGAGGAAGTAGGTTGCTGGTTGATAGTTGTCCTTGCAATGTTGTCTCTCAACTTTGCTCTTTGGCAATTGGACTTCAAGACTGTAGCCTTACTACTGGTGAGACTAAGGTGGATCAAGCAAATAGTTGCAAGAGCAAAACCCTTCAGTTGAGTACATCTAATTCAGCCAAGTGTTCCAAAAATCTGATCGACCTTGCAGTAGCAGGAGCTGCAGAGAAGAACATGGGAACTGCAATTATCGGGCGCATAAATTCAAGAACGGAGTTGGCTGAAGCTTGGCGTTAA 1539 0.4464 MTEVLQSPSHLPSPSSCSSSPCGGSHQSALINSPNTVEVVEGVVQSHLDLGRVTEETGEEEEEEEEGVKAEKDREGDQLSILTLLIATFRKSLIGCSASSGDISSSSSMEIGWPSNVRHVAHVTFDRFHGFLGLPVEFEPEVPRRPPSASANVFGVSTESMQLSFDARGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENSQEEFVREQLNRGVVPEGIDVHCLAGLIKAWFRELPTGVLDPLSPEQVMQSQSEEECSQLVRLLPPTEAALLDWAINLMADVAQLEHLNKMNARNVAMVFAPNMTHMTDPLTALMYAVQVMNFLKTLVVKTLREREESMVKSNPVSNLNTFDDDGHHSSSQLILTDDSENGKDSSDEDAEFVTEEPSQQSPSHVMEDGCRSESGSKSLPTSTEKFVSRGSRLLVDSCPCNVVSQLCSLAIGLQDCSLTTGETKVDQANSCKSKTLQLSTSNSAKCSKNLIDLAVAGAAEKNMGTAIIGRINSRTELAEAWR* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2889 512 MobiDBLite consensus disorder prediction 48 74 - -
Dod01g2889 512 SUPERFAMILY GTPase activation domain, GAP 151 329 IPR008936 GO:0007165
Dod01g2889 512 MobiDBLite consensus disorder prediction 339 413 - -
Dod01g2889 512 CDD RhoGAP 173 328 - -
Dod01g2889 512 ProSiteProfiles Rho GTPase-activating proteins domain profile. 156 341 IPR000198 GO:0007165
Dod01g2889 512 SMART PBD_5 111 145 IPR000095 -
Dod01g2889 512 PANTHER MKIAA1688 PROTEIN 1 512 IPR044785 GO:0005096
Dod01g2889 512 Pfam RhoGAP domain 173 307 IPR000198 GO:0007165
Dod01g2889 512 MobiDBLite consensus disorder prediction 1 36 - -
Dod01g2889 512 Pfam P21-Rho-binding domain 110 136 IPR000095 -
Dod01g2889 512 Gene3D CRIB domain 105 140 IPR036936 -
Dod01g2889 512 PANTHER RHO GTPASE-ACTIVATING PROTEIN 1 1 512 - -
Dod01g2889 512 SMART RhoGAP_3 170 333 IPR000198 GO:0007165
Dod01g2889 512 CDD CRIB 109 149 - -
Dod01g2889 512 Gene3D Rho GTPase activation protein 144 343 IPR008936 GO:0007165
Dod01g2889 512 MobiDBLite consensus disorder prediction 342 369 - -
Dod01g2889 512 ProSiteProfiles CRIB domain profile. 111 124 IPR000095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2889 Dod-Chr1 69340386 69345933 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2889 - - aip:107604632 752.666