Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2888 ATGGAGGCTGTGCACTTGTCTGCCGTTGCTTCCCGCCAATTCTCCACTGTTGCTGCTCCTTCCTTCTCTCAGAACCGAACCTTGTGCTCTTCTTCCTCTCCCAAACCAACCAAGCTATGTTCCCCTTGGACCGGTTCAACAACACACGCTACTTCCTTTTCTTCCAGAAACTTATTCACGAATGAGATATGGAGTTGGGTGAACTCCAAGAGCGTGGCTGTGAGGAGGGACATGCGCGGAGTTGTGAGGGCTGAGATGTTTGGGCAGTTGACCAGTGGCCTTGAGGCTGCCTGGAACAAGCTCAAAGGAGAAGAGGTTTTGACCAAAGAGAATATTGTGGAGCCTATGCGTGATATTAGGAGAGCTCTTTTGGAAGCAGATGTTAGCCTTCCTGTTGTGAGAAGGTTTGTGCAAGCTGTCAGTGATCAGGCTGTGGGTGTTGGCCTCATTCGAGGAGTGAGGCCAGATCAGCAGTTGGTTAAGATTGTACATGATGAACTAGTAAAATTGATGGGTGGAGAGGTCGCTGAACTGGTTTTTGCCAAATCAGGGCCCACTGTGATTTTACTGGCTGGACTCCAGGGAGTTGGGAAAACGACTGTTTGTGCAAAGTTGGCAAATTATCTCAAGAAACAGGGGAAGAGTTGCATGCTAGTTGCTGGAGATGTTTACAGACCTGCTGCTATCGATCAACTTGCTATTTTGGGTAAACAGGTGGATGTGCCTGTCTATACAGCAGGTACTGATGTTAAACCTTCAGAAATTGCTAAACAAGGTTTAGAGGAGGCGAAAAAGAAGAACATTGATGTCGTTATTGTTGACACAGCCGGTAGGCTGCAGATAGACAAAGCAATGATGGATGAATTAAAAGAAGTGAAGCAGGCATTGAATCCAACAGAAGTTTTGCTAGTTGTGGATGCAATGACAGGGCAAGAAGCAGCAGCCTTGGTGACTACTTTCAATCTTGAGATTGGAATAACAGGTGCCATCTTGACAAAGCTAGATGGTGATTCAAGAGGTGGGGCAGCGTTGAGTGTTAAAGAGGTATCTGGAAAGCCAATCAAGCTAGTAGGACGGGGGGAACGCATGGAGGATCTTGAACCTTTCTACCCTGATCGAATGGCAGGACGCATATTAGGGATGGGAGATGTTCTTTCATTTGTAGAGAAGGCACAGGAAGTTATGCAACAAGAAGATGCTGAAGAACTGCAAAAGAAGATCATGAGTGCAAAGTTCGACTTCAATGATTTTCTAAAGCAAACCCGTGCTGTTGCACGAATGGGTTCTGTGTCTCGTGTCATTGGAATGATTCCTGGTATGGGGAAGGTTACTCCTGCTCAAATTCGAGATGCAGAGAAGAATTTGAAGCAAATGGAAGCAATGATAGAAGCGATGACCCCTGAGGAGAGGGAAAAGCCAGAACTGTTGGCAGAATCACCTGTCAGGAGGAAAAGAGTTGCTCAGGATTCAGGGAAAACAGAGCAGCAGGTAAGCCAACTTGTAGCTCAACTGTTTCAAATGCGCGTTCGTATGAAGAATCTGATGGGTGTAATGCAAGGTGGATCAATTCCAACACTTAGTAATCTAGAGGAAGCACTTAAAACAGAGGAAAAGGCTCCACCTGGTACTGCAAGGAGGAAGAAGAGATCGGAATCGAGGAGACAATTTGTGGACTCAACGTCAGCAAGGCCAGCTCCCCGTGGATTTGGGAGCAAGAATTGA 1722 0.4652 MEAVHLSAVASRQFSTVAAPSFSQNRTLCSSSSPKPTKLCSPWTGSTTHATSFSSRNLFTNEIWSWVNSKSVAVRRDMRGVVRAEMFGQLTSGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSDQAVGVGLIRGVRPDQQLVKIVHDELVKLMGGEVAELVFAKSGPTVILLAGLQGVGKTTVCAKLANYLKKQGKSCMLVAGDVYRPAAIDQLAILGKQVDVPVYTAGTDVKPSEIAKQGLEEAKKKNIDVVIVDTAGRLQIDKAMMDELKEVKQALNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEELQKKIMSAKFDFNDFLKQTRAVARMGSVSRVIGMIPGMGKVTPAQIRDAEKNLKQMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMQGGSIPTLSNLEEALKTEEKAPPGTARRKKRSESRRQFVDSTSARPAPRGFGSKN* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2888 573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 438 IPR027417 -
Dod01g2888 573 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 60 573 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Dod01g2888 573 TIGRFAM ffh: signal recognition particle protein 88 512 IPR004780 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Dod01g2888 573 Pfam SRP54-type protein, GTPase domain 185 380 IPR000897 GO:0005525|GO:0006614
Dod01g2888 573 PANTHER BNAC02G02820D PROTEIN 60 573 - -
Dod01g2888 573 Pfam Signal peptide binding domain 411 509 IPR004125 GO:0006614|GO:0008312|GO:0048500
Dod01g2888 573 Pfam SRP54-type protein, helical bundle domain 90 167 IPR013822 GO:0005525|GO:0006614
Dod01g2888 573 CDD SRP_G 186 378 - -
Dod01g2888 573 Gene3D - 391 515 IPR036891 GO:0006614|GO:0008312|GO:0048500
Dod01g2888 573 MobiDBLite consensus disorder prediction 534 573 - -
Dod01g2888 573 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 353 366 IPR000897 GO:0005525|GO:0006614
Dod01g2888 573 SMART SRP54_3 185 380 IPR000897 GO:0005525|GO:0006614
Dod01g2888 573 MobiDBLite consensus disorder prediction 534 556 - -
Dod01g2888 573 SMART SRP54_N_2 86 171 IPR013822 GO:0005525|GO:0006614
Dod01g2888 573 MobiDBLite consensus disorder prediction 467 490 - -
Dod01g2888 573 Gene3D - 175 369 IPR027417 -
Dod01g2888 573 Coils Coil 448 468 - -
Dod01g2888 573 MobiDBLite consensus disorder prediction 467 495 - -
Dod01g2888 573 Gene3D - 89 390 IPR042101 -
Dod01g2888 573 SUPERFAMILY Signal peptide-binding domain 411 512 IPR036891 GO:0006614|GO:0008312|GO:0048500
Dod01g2888 573 Hamap Signal recognition particle 54 kDa protein [srp54]. 90 530 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Dod01g2888 573 SMART AAA_5 184 331 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2888 Dod-Chr1 69334248 69340284 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2888 K03106 - mnt:21402095 965.681