Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2823 ATGAGATTGAGAAAGCGCGCTGCTATTCTTCAACTTCATCTTCTTCCCAATTCCCACGTCTGCAATCCCATTTTTGCCCCTCGCTCCCTCTCCTTGTCCTTCTCCTTCTCCTCCCAATCACACACACTTTCCGATGAACCCGATCCCCAACGCAACAAAAAGCTTCAAAAGGTTGAAAAGTTTCAGTCTTTTCTAGAGAAGGGTCACACGATCACCGCTAAAAGGTTCCTCATATCCCTTGTTCACTCCAAAACCCCATTCTCTTCACCCTCCGAGATCCACGCCTTCGTATCCAAACCCCTCTTCTCCGACACCCTCTTATGGACCTGCTCCGTTCCCAAATTGCTCAACGAAGCCACCGAGTTGTACTATTCCATGAGGAAAGACGGTTTTGCTCCTTCCACCCGTTCCGTCAACCGTTTGCTCCATACCCTGGTGGCTTCCAAACAGTTCGACAAGGCTCTTATTCTGTTCTCGGACTCTGTAGGGTCCGGTATTCGACCTGATACGGTGTCGTACAAGAAGGCTGTTTTTGCGGCGGTGATGCTGAGGGACCTTAACAAGTGTTTTGAGTTGATGGGTTCCATGGAGAAGGAAGGGTTGAGACCCTCTGTTTTCGTGTACAATTTGGTCATCGGGGCTTTGTGCAAAGCCAGGAAGATCAGGGATGCTCGGAAGATGTTTGATGAAATGGCTGGGAGGAACCTGGTTCCGAATACGGTTACGTATAATACCCTGATTGATGGATACTTTAAGGTAGGTGAATTGGAGGAAGCTTTCAGCTTGAGGGAGAGGATGAAGACCCAGAATGTCGAGCCTAGTCGTGTCACCTACAATTCCTTGTTGAGTGCTCTCTGTGGTTCTGGGAGGTTGGAAGATTCGAGGAAGGTGTTGCTAGAGATGGAGGCTGGTGGCTTTTTGCCTGCTGGGTTTTCGCTTCTTGTATTTGATGGTGATCGATCAATGTGCGCAAGTGATGGTTCTTTGGATGAGAAAGTGTTTGGCAAAGGAGAGTTAGAATTGATCGAGGAGCATACCATTTCTATTTTGTTGAATGGACTATGTAGGGTAGGCAGGGTTGAAAAGGCCAAGGAAGTTTTGGCAAAATTAGTGGATAATGGGTTTATTCCTAGCAAGATAGCGTATAACATATTGGTGAATGCATATTGCCAAGAAGCTGACATGAAGAAAGCTATACTGACTGCTGAACAAATGGAAGAACAAGGGGTGAAGGCTAGTTTTGTCACTTTCAATACCTTGATTAGCAAGCTCTGTGAAACCAAGGAGGTGGACCAGGCAGAGAGATGGGTGAGGAAAATGATAGAGAAGGATGTTTCCCCCACTGTGGAAACTTATAATTCTTTGATTGATGGTTATGGCCGGATGTGCCATTTTGTTAGGTGTTTTGAGATTCTTGAGGAGATGGAAAAGGTTGGGATAAAGCCTAATGTCATAAGCTATGGCGCTCTAATAAATTGTCTATGCAAAGATCGCAAGCTTCTTGATGCTGAAATTGTCCTTGGAGATATGGCAGGTCGTGGGGTTTCACCAAATGCAGAAATATATAATATGCTTATCGAAGCCAGTTGCTCATTGAGTAAATTGAAAGATGCCCACAGATTTTTTGATGAAATGGTGAAAAATGGAATAGATCCAACTCTAGTGACATACAATACACTAATAAATGGACTTGGAAGAAATGGAAAGGTAAGGGAAGCTGAGGGTCTGTTTCTCCAATTGACTAGCAAGGGATTAAAGCTGGATGCGATCTCATACAATTCCCTGATCTCAGGATATGCCAAGTCAGGAAACAGTCAGAAATGCATCGAGTTGTATGAGAATATGAAGACACTAAGCATTAAACCTACGATTGGGACCTTTCATCCTTTGATCAATGCGTGCAGGAAGGAAGGAATGGTAAGAGTAGAGAGAATGTTTCAAGAAATGTTACGAATGGACTTACTTCCTGATCGAGTCATATACAATGAAATGATGTATGGTTATGCTGAAGAAGGAAATGTTCTGAAAGCACTGTCCTTGTACCAACAGATGGTTGATCAGGGAGTTGGTTGCGACAAGGTTACTTACAACTGCTTGATTCTTGGATGCCTCAGAGATAGAAGGGTTTCAGAAGTAAAGCATCTCGTTGATGATATGAAGGTTAAGGGACTGGCCCCGAAAATGGATACATATAACATCCTGGTTAAGGGGCATTGCGACATAAAAGATTTCAACGGTGCCTATTTTTGGTATCGGGAAATGTTTGACAGGGGCTTGCTTTTAAATCCCCGTATCTGCTATCAGCTGTTAATCGGACTTAGAGAGGAGGGAATGCTGCGAGAGGCCCAAATCTTATCCTCAGAATTAAGTAGTAGAGGACTGAACAACTAG 2391 0.4417 MRLRKRAAILQLHLLPNSHVCNPIFAPRSLSLSFSFSSQSHTLSDEPDPQRNKKLQKVEKFQSFLEKGHTITAKRFLISLVHSKTPFSSPSEIHAFVSKPLFSDTLLWTCSVPKLLNEATELYYSMRKDGFAPSTRSVNRLLHTLVASKQFDKALILFSDSVGSGIRPDTVSYKKAVFAAVMLRDLNKCFELMGSMEKEGLRPSVFVYNLVIGALCKARKIRDARKMFDEMAGRNLVPNTVTYNTLIDGYFKVGELEEAFSLRERMKTQNVEPSRVTYNSLLSALCGSGRLEDSRKVLLEMEAGGFLPAGFSLLVFDGDRSMCASDGSLDEKVFGKGELELIEEHTISILLNGLCRVGRVEKAKEVLAKLVDNGFIPSKIAYNILVNAYCQEADMKKAILTAEQMEEQGVKASFVTFNTLISKLCETKEVDQAERWVRKMIEKDVSPTVETYNSLIDGYGRMCHFVRCFEILEEMEKVGIKPNVISYGALINCLCKDRKLLDAEIVLGDMAGRGVSPNAEIYNMLIEASCSLSKLKDAHRFFDEMVKNGIDPTLVTYNTLINGLGRNGKVREAEGLFLQLTSKGLKLDAISYNSLISGYAKSGNSQKCIELYENMKTLSIKPTIGTFHPLINACRKEGMVRVERMFQEMLRMDLLPDRVIYNEMMYGYAEEGNVLKALSLYQQMVDQGVGCDKVTYNCLILGCLRDRRVSEVKHLVDDMKVKGLAPKMDTYNILVKGHCDIKDFNGAYFWYREMFDRGLLLNPRICYQLLIGLREEGMLREAQILSSELSSRGLNN* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2823 796 Gene3D Tetratricopeptide repeat domain 642 795 IPR011990 GO:0005515
Dod01g2823 796 Gene3D Tetratricopeptide repeat domain 180 332 IPR011990 GO:0005515
Dod01g2823 796 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Dod01g2823 796 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Dod01g2823 796 Pfam PPR repeat 348 375 IPR002885 -
Dod01g2823 796 Pfam PPR repeat 659 689 IPR002885 -
Dod01g2823 796 SUPERFAMILY HCP-like 356 615 - -
Dod01g2823 796 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 482 IPR002885 -
Dod01g2823 796 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Dod01g2823 796 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 38 789 - -
Dod01g2823 796 Gene3D Tetratricopeptide repeat domain 338 426 IPR011990 GO:0005515
Dod01g2823 796 Gene3D Tetratricopeptide repeat domain 427 533 IPR011990 GO:0005515
Dod01g2823 796 Gene3D Tetratricopeptide repeat domain 534 641 IPR011990 GO:0005515
Dod01g2823 796 Gene3D Tetratricopeptide repeat domain 101 179 IPR011990 GO:0005515
Dod01g2823 796 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Dod01g2823 796 TIGRFAM PPR: pentatricopeptide repeat domain 415 449 IPR002885 -
Dod01g2823 796 TIGRFAM PPR: pentatricopeptide repeat domain 485 519 IPR002885 -
Dod01g2823 796 TIGRFAM PPR: pentatricopeptide repeat domain 381 412 IPR002885 -
Dod01g2823 796 TIGRFAM PPR: pentatricopeptide repeat domain 555 589 IPR002885 -
Dod01g2823 796 TIGRFAM PPR: pentatricopeptide repeat domain 241 274 IPR002885 -
Dod01g2823 796 TIGRFAM PPR: pentatricopeptide repeat domain 451 484 IPR002885 -
Dod01g2823 796 TIGRFAM PPR: pentatricopeptide repeat domain 590 623 IPR002885 -
Dod01g2823 796 TIGRFAM PPR: pentatricopeptide repeat domain 207 240 IPR002885 -
Dod01g2823 796 TIGRFAM PPR: pentatricopeptide repeat domain 730 762 IPR002885 -
Dod01g2823 796 TIGRFAM PPR: pentatricopeptide repeat domain 694 726 IPR002885 -
Dod01g2823 796 TIGRFAM PPR: pentatricopeptide repeat domain 276 308 IPR002885 -
Dod01g2823 796 TIGRFAM PPR: pentatricopeptide repeat domain 346 378 IPR002885 -
Dod01g2823 796 TIGRFAM PPR: pentatricopeptide repeat domain 659 692 IPR002885 -
Dod01g2823 796 TIGRFAM PPR: pentatricopeptide repeat domain 521 553 IPR002885 -
Dod01g2823 796 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 657 691 IPR002885 -
Dod01g2823 796 PANTHER ATPASE EXPRESSION PROTEIN 3 38 789 - -
Dod01g2823 796 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Dod01g2823 796 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
Dod01g2823 796 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 727 761 IPR002885 -
Dod01g2823 796 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 692 726 IPR002885 -
Dod01g2823 796 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Dod01g2823 796 Pfam PPR repeat family 693 739 IPR002885 -
Dod01g2823 796 Pfam PPR repeat family 447 496 IPR002885 -
Dod01g2823 796 Pfam PPR repeat family 517 565 IPR002885 -
Dod01g2823 796 Pfam PPR repeat family 378 425 IPR002885 -
Dod01g2823 796 Pfam PPR repeat family 588 634 IPR002885 -
Dod01g2823 796 Pfam PPR repeat family 238 286 IPR002885 -
Dod01g2823 796 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 553 587 IPR002885 -
Dod01g2823 796 Pfam PPR repeat 200 231 IPR002885 -
Dod01g2823 796 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 517 IPR002885 -
Dod01g2823 796 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 518 552 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2823 343 795 Glycosyltransferase AT1G05670 25.306 1.24e-53 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2823 - - adu:107493865 1187.56