Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2806 ATGGCCGTCCACGCCTTCCTCCTCAAGCACCACCACACCCACCTCGCCACTCCCCTCATCACCACCTACCTCAAGCTCCGCCTCTTGCACCACGCCCACCGCGTCTTCCTCTCCCTCCCTTCCCCCAACGTCGTCGTCTACTCCTCCCTTATCTCTGCCTTCTCGAAATCCAACCAACCCCATCAAGCACTTCGCCTCTTCCTCCACATGACAGCTTCCGGTGTTCACCCGAACGAGTACTCCTTCGTCGCCCTCTTAACCTCTTGCATTCGAACCCTCAATCTCCAACTGGGTCTTCAGGTACACGGTTACGTCATCAAAACCCGCCATTTGGAATGTGCTTTTGTCACAAACGCGCTTATGGGGTTGTACGGTAAGTGCGGGTGTTACCACCTTGTGCTTAAACTGTTCGACGAAATGCCCCGCAGGGACATTGCGTCTTGGAATACTGTTATGGCCGGTGCCCTGAAGGAGGTCATGTATGGAACGGTTTTTGGGGTGTTCCGTGACATGCAGGCAACTGATGCAGCTTTGAGGGTGGACGATTTTACTCTTTCAACACTTTTGGCTGCGTGTGCTGGGAGGGTTGCTGTGATGGAAGGTTGCCAGGTTCACACGCATGCCATTAAGGTTGGACTGGACACTGATTTGAGTGTTGGCAATGCCCTTATTGGGTTCTACACAAAGTGTGGAACCCTTGAGGATGTGGTGTGGTTGTTTGAGGGGATGAGTGTGAGGGATGTGATAACTTGGACAGAGATGGTAACTGCGTACATGGAGTTCGGGTTGGTGGATTTGGCTTTGGAGGTGTTTGATGAGATGCCAGAGAAGAATGCTGTGTCTTACAATGCTCTCTTGTCTGGGTTTTATCGGAATGGCGAAGCCTTGAAGGCTCTTGATTTGTTTATCAATATGGTGGATGAGGGCATGGAGTTAACGGATTTCTCTTTGACTAGCGTCGTTAATGCCTGCAGCTTGCTTGCTGACTACAATGTCAGCAGGCAGGTTCATGGGTTTGCTCTGAAGTTTGGTTTTGGATCAAATGCTTGTGTTGAAGCAGCATTGCTTGACTTGTACACAAGGTGTGGGAGGATGGGGGATGCCAGGAAGATGTTCTGCAGGTGGGAGTTGGAGGAATTCAGCTCTGTAGCATGGACATCCATGATTTGTGGCTATGCTCGAAACGGGCAACCGGACCAGGCAATATCTCTTGTCCACCGTAGTCAGTCGGAAGGGAAGATGATCATGGATGAAGTTGCTTCAACTTCCATGCTCAGTCTTTGTGGAACTATTGGCTGTCATGATATTGGTGAGCAAATCCACTGCCATGTTCTTAAGTTTGGCTTTGAATCCAATAGGGGAGTTGGAAATGCAGTTGTTAGCATGTATTTTAAGTGTGGGAATGTGGATGATGCAATCAGGATGTTCAATGATATGCCATCAACTGATATTGTTTCGTGGAATACTTTGATTTCTGGCCATCTTCTGCATAGGCAAGGTGATAGAGCATTGGAAGTCTGGTCAGATATGCAGAAGAAGGGCATAAAGCCTGACCAAGTTACATTTGTTTTGATAATTTCAGCTTACGGACAAACTCACTTGAATTTGGTTGACGATTGCCGTAGTCTGTTTGATTCAATGAGAACCGTTTATCAAATTGAGCAGACATCCGAGCATTATTCCTCTTTCATCAGTGTTTTGGGTCACTGGGGCCTTCTAGAAGAAGCAGAGGAAACTATCAGTAAGATGCCTTTTGAGCCTTCTTCTTCTGTTTGGCGTGCTTTGCTTGATAGTTGTAGACTGCATAAGAACACAATGATTGGAAAACGGGCTGCTAAGCATATTCTTGCCCTGGAACCGAAAGATCCTTCTGCCTATATACTTGTTTCAAATTTGTATTCTGCTTCTGGGAGATGGCATCACTCTGAAATGGTCAGGGAGACTATGAGAAACAAGGGAATCCGCAAACACCCAGCTCAAAGTTGGATCATTTGTCAGAAGAAAATACATTCATTCTATGCAAGAGATAGATCCCATCCGCAAGAGAAAGACATATATAGTGGATTGGACATTCTAATCTTGGAGTGCTTAAAAGCTGGATATGAACCTGACACGAGCTTTGTTCTCCATGAAGTAGAGGAGCATCAGAAGAAAAACTTTCTATTCTATCACAATGCAAAACTAGCTGCAGCTTATGGAATACTGATGACCAAGCCGGGAAAGCCAGTTCGGATCGTAAAGAACATCGTTCTTTGTGGGGACTGCCATGCATTCTTGAAATATGTATCTGTTGTCACCAAGAGGGATATTTTTCTAAGAGATTCTTCAGGATTTCATTGTTTCTCAAATGGCCGGTGCTTGTGTAATGATTACTGGTGA 2379 0.4632 MAVHAFLLKHHHTHLATPLITTYLKLRLLHHAHRVFLSLPSPNVVVYSSLISAFSKSNQPHQALRLFLHMTASGVHPNEYSFVALLTSCIRTLNLQLGLQVHGYVIKTRHLECAFVTNALMGLYGKCGCYHLVLKLFDEMPRRDIASWNTVMAGALKEVMYGTVFGVFRDMQATDAALRVDDFTLSTLLAACAGRVAVMEGCQVHTHAIKVGLDTDLSVGNALIGFYTKCGTLEDVVWLFEGMSVRDVITWTEMVTAYMEFGLVDLALEVFDEMPEKNAVSYNALLSGFYRNGEALKALDLFINMVDEGMELTDFSLTSVVNACSLLADYNVSRQVHGFALKFGFGSNACVEAALLDLYTRCGRMGDARKMFCRWELEEFSSVAWTSMICGYARNGQPDQAISLVHRSQSEGKMIMDEVASTSMLSLCGTIGCHDIGEQIHCHVLKFGFESNRGVGNAVVSMYFKCGNVDDAIRMFNDMPSTDIVSWNTLISGHLLHRQGDRALEVWSDMQKKGIKPDQVTFVLIISAYGQTHLNLVDDCRSLFDSMRTVYQIEQTSEHYSSFISVLGHWGLLEEAEETISKMPFEPSSSVWRALLDSCRLHKNTMIGKRAAKHILALEPKDPSAYILVSNLYSASGRWHHSEMVRETMRNKGIRKHPAQSWIICQKKIHSFYARDRSHPQEKDIYSGLDILILECLKAGYEPDTSFVLHEVEEHQKKNFLFYHNAKLAAAYGILMTKPGKPVRIVKNIVLCGDCHAFLKYVSVVTKRDIFLRDSSGFHCFSNGRCLCNDYW* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2806 792 Gene3D Tetratricopeptide repeat domain 333 434 IPR011990 GO:0005515
Dod01g2806 792 Gene3D Tetratricopeptide repeat domain 3 111 IPR011990 GO:0005515
Dod01g2806 792 Gene3D Tetratricopeptide repeat domain 435 532 IPR011990 GO:0005515
Dod01g2806 792 Gene3D Tetratricopeptide repeat domain 112 198 IPR011990 GO:0005515
Dod01g2806 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 43 77 IPR002885 -
Dod01g2806 792 PANTHER OS07G0172600 PROTEIN 2 318 - -
Dod01g2806 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
Dod01g2806 792 Pfam PPR repeat family 277 324 IPR002885 -
Dod01g2806 792 Pfam PPR repeat family 483 529 IPR002885 -
Dod01g2806 792 Pfam PPR repeat family 42 89 IPR002885 -
Dod01g2806 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 517 IPR002885 -
Dod01g2806 792 Pfam DYW family of nucleic acid deaminases 700 792 IPR032867 GO:0008270
Dod01g2806 792 Pfam E motif 602 663 IPR046848 -
Dod01g2806 792 TIGRFAM PPR: pentatricopeptide repeat domain 457 485 IPR002885 -
Dod01g2806 792 TIGRFAM PPR: pentatricopeptide repeat domain 249 277 IPR002885 -
Dod01g2806 792 TIGRFAM PPR: pentatricopeptide repeat domain 383 412 IPR002885 -
Dod01g2806 792 TIGRFAM PPR: pentatricopeptide repeat domain 485 518 IPR002885 -
Dod01g2806 792 TIGRFAM PPR: pentatricopeptide repeat domain 118 145 IPR002885 -
Dod01g2806 792 TIGRFAM PPR: pentatricopeptide repeat domain 280 313 IPR002885 -
Dod01g2806 792 TIGRFAM PPR: pentatricopeptide repeat domain 45 79 IPR002885 -
Dod01g2806 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Dod01g2806 792 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 312 403 - -
Dod01g2806 792 PANTHER OS07G0172600 PROTEIN 394 778 - -
Dod01g2806 792 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 394 778 - -
Dod01g2806 792 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 318 - -
Dod01g2806 792 PANTHER OS07G0172600 PROTEIN 312 403 - -
Dod01g2806 792 Gene3D Tetratricopeptide repeat domain 533 675 IPR011990 GO:0005515
Dod01g2806 792 Gene3D Tetratricopeptide repeat domain 199 332 IPR011990 GO:0005515
Dod01g2806 792 Pfam PPR repeat 118 145 IPR002885 -
Dod01g2806 792 Pfam PPR repeat 457 480 IPR002885 -
Dod01g2806 792 Pfam PPR repeat 383 412 IPR002885 -
Dod01g2806 792 Pfam PPR repeat 221 246 IPR002885 -
Dod01g2806 792 Pfam PPR repeat 559 583 IPR002885 -
Dod01g2806 792 Pfam PPR repeat 354 375 IPR002885 -
Dod01g2806 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 277 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2806 Dod-Chr1 68172197 68175083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2806 3 792 Glycoside Hydrolase AT3G49170 33.582 2.88e-148 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2806 - - lang:109337571 1279.23