Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2782 ATGTCGTTCCGTTTTGGAGGGCTCGTGACGACCTCGCCATTGCTCTTTCTTATTGTTGTTGCATTTGCACTTCCTCATGTCCATGCAAGCACCAATGCAGCCCACAATATAGCTGGACGTAGCAAGTTAATTGCCCACAATAAGCATCGCCCCAGGTTTGCACCTGGCCCCTGGAGGCAAGCTCATGCTACCTTCTATGAAGGAGGTCCTGGAACATATGGAGGAGCTTGTGGATATGAGGACGTGGTTAAAGATGGTTATGGGCTTGACACCACAGCAGTGAGCACAGTTATGTTCAACCAAGGTCAGACATGCGGTGCATGTTACGAGATCAAATGTGTGGACTCTCCACAAGGGTGTAAGCCAGGACAACCCTCCATCTTTGTCACGGCAACCGACCTTTGCCCTCCCAACTATTATCAAGCAAGTAACAATGGAGGATGGTGCAACCCACCTCGTGAGCACTTTGATTTGGCCGAACCCGCATATCTCAAGTTTGCAGAATACAAGGCTGGCATCGTCCCCGTCCAATACCGCAGGATACCATGCAAGAGGCAAGGAGGTATTAGGTTCACCATCACAGGGAATCCTTACTTCAATCTAGTAAAAGTATGGAATGTTGGGGGTGCTGGAGATGTCGTGGGAGTTCAAGTGAAGGGTGATGACAAGCTCAAATGGACAGAATTGAAGCGGGATTGGGGTCAGAAATGGGAGACTAATGCTATGTTAGTGGGAGAATCATTGACCTTCAGGGTGAGAGCAAGTGATGGCAGGTTCTCTACCTCATGGCATGTTGCCCCCAGGAATTGGCAGTTTGGTCAGACTTTCGAAGGCAAAAACTTCAGATAA 849 0.49 MSFRFGGLVTTSPLLFLIVVAFALPHVHASTNAAHNIAGRSKLIAHNKHRPRFAPGPWRQAHATFYEGGPGTYGGACGYEDVVKDGYGLDTTAVSTVMFNQGQTCGACYEIKCVDSPQGCKPGQPSIFVTATDLCPPNYYQASNNGGWCNPPREHFDLAEPAYLKFAEYKAGIVPVQYRRIPCKRQGGIRFTITGNPYFNLVKVWNVGGAGDVVGVQVKGDDKLKWTELKRDWGQKWETNAMLVGESLTFRVRASDGRFSTSWHVAPRNWQFGQTFEGKNFR* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2782 282 SMART dpbb_1 91 178 IPR007112 -
Dod01g2782 282 PRINTS Expansin/Lol pI family signature 57 72 IPR007118 GO:0005576
Dod01g2782 282 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Dod01g2782 282 PRINTS Expansin/Lol pI family signature 95 113 IPR007118 GO:0005576
Dod01g2782 282 PRINTS Expansin/Lol pI family signature 264 278 IPR007118 GO:0005576
Dod01g2782 282 PRINTS Expansin/Lol pI family signature 171 187 IPR007118 GO:0005576
Dod01g2782 282 Pfam Lytic transglycolase 92 178 IPR009009 -
Dod01g2782 282 Gene3D - 41 184 IPR036908 -
Dod01g2782 282 PRINTS Expansin signature 187 199 IPR002963 GO:0009664
Dod01g2782 282 PRINTS Expansin signature 163 176 IPR002963 GO:0009664
Dod01g2782 282 PRINTS Expansin signature 235 256 IPR002963 GO:0009664
Dod01g2782 282 PRINTS Expansin signature 113 124 IPR002963 GO:0009664
Dod01g2782 282 PRINTS Expansin signature 199 220 IPR002963 GO:0009664
Dod01g2782 282 PRINTS Expansin signature 146 163 IPR002963 GO:0009664
Dod01g2782 282 PRINTS Expansin signature 86 100 IPR002963 GO:0009664
Dod01g2782 282 PRINTS Expansin signature 127 137 IPR002963 GO:0009664
Dod01g2782 282 PRINTS Expansin signature 264 280 IPR002963 GO:0009664
Dod01g2782 282 PANTHER EXPANSIN-A15 30 282 IPR002963 GO:0009664
Dod01g2782 282 PANTHER EXPANSIN-A32 30 282 - -
Dod01g2782 282 Pfam Expansin C-terminal domain 189 267 IPR007117 -
Dod01g2782 282 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 74 188 IPR007112 -
Dod01g2782 282 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 198 278 IPR007117 -
Dod01g2782 282 SUPERFAMILY Barwin-like endoglucanases 57 206 IPR036908 -
Dod01g2782 282 Gene3D - 188 281 IPR036749 -
Dod01g2782 282 SUPERFAMILY PHL pollen allergen 185 278 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2782 Dod-Chr1 67696899 67698888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2782 41 282 Miscellaneous Gene Families AT5G02260 60.246 1.08e-111 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2782 - - gmx:100800424 427.557