Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2733 ATGCAGCACGCTGCCATGGCAGGCACACAGTTCCTCTCCCACTCTCTTTCCATTCCCGGAACCTCCAATCACTCCTTAACCCAAAACCCATTACCCCGAAACCTAGTTCTACCCCGCAAACCCAAAGCTTCCATTAAACCGCGTGTTCTCAGAGCGGTTCTGTCTCAGAAGACCCATGTGGAAGACCCTAAGAAGAAGACTCATTTCAAGCACTGTTTCACAAAATCCGATGATGGGTACCTCTACTGTGAGGGAACGAAAGTGCAGGAGATCATGGAGTCTGTTGAGAGGAGACCCTTCTACTTATACAGCAAGCCGCAGATTACTAGGAACGTTGAGGCATATAGGGATGCATTGGAAGGGTTGAACTCTATCATTGGTTATGCCATCAAGGCCAATAACAACTTGAAGATTCTGGAGCACTTGAGGCACTTGGGTTGTGGTGCTGTGCTTGTCAGTGGCAACGAGCTGAGGCTAGCTCTTCGTGCTGGCTTTGATCCCACAAGGTGTGTCTTTAATGGGAATGGGAAGATATTGGATGATTTGGTCTTGGCTGCCCAAGAAGGAGTGTTTATCAACATTGACAGTGAGTTTGACTTGGAGAACATTGTGGCTGCCGCTAGAATTGCTGGAAAGAGGGTCAAAGTTTTACTTCGGATCAACCCTGATGTGGATCCACAGGTTCATCCTTATGTTGCCACTGGGAATAAGAACTCTAAATTTGGAATTAGAAATGAGAAGCTGCAGTCGTTTTTAGATGCTATAAAGGAGCACCCTAATGAGTTGAAGCTTGTAGGTGCCCACTGCCATCTTGGGTCAACAATTACCAAGGTAGACATTTTCAGGGATGCTGCCGTTATTATGATCAACTACATTGACGAGATCCGTGCTCAGGGTTTTGAAGTTGATTATTTAAATATTGGTGGTGGACTTGGGATTGATTATTATCATTCTGATGCTATCCTTCCTACACCCAGGGATCTCATTGATACTGTACGAGAGCTTGTTCTTTCCCGTAATCTCAATCTCATCATTGAACCAGGGAGATCGCTCATTGCAAACACCTGTTGCTTAGTTAACCGGGTGACAGGTGTCAAAACCAATGGATCTAAAAACTTCATTGTAATTGATGGAAGCATGGCTGAACTTATCCGCCCTAGTCTTTATGATGCTTACCAGCATATAGAGCTGGTTTCTCCTGCCCCACAAAATGCTGAGCTATCAACCTTTGATGTGGTCGGTCCTGTCTGTGAGTCTGCAGATTTTTTAGGAAAAGGAAGAGAACTCCCAACGCCGGCCAAGGGTACTGGTCTGGTTGTTCATGATGCTGGTGCTTACTGCATGAGCATGGCATCAACTTACAATCTAAAGATGCGGCCTCCTGAATATTGGGTTGAAGAAGATGGATCAGTGAGCAAAATAAGACATGGAGAGACATTTGAAGACCACATTCGGTTTTTTGAGGGCCTATGA 1473 0.4542 MQHAAMAGTQFLSHSLSIPGTSNHSLTQNPLPRNLVLPRKPKASIKPRVLRAVLSQKTHVEDPKKKTHFKHCFTKSDDGYLYCEGTKVQEIMESVERRPFYLYSKPQITRNVEAYRDALEGLNSIIGYAIKANNNLKILEHLRHLGCGAVLVSGNELRLALRAGFDPTRCVFNGNGKILDDLVLAAQEGVFINIDSEFDLENIVAAARIAGKRVKVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQSFLDAIKEHPNELKLVGAHCHLGSTITKVDIFRDAAVIMINYIDEIRAQGFEVDYLNIGGGLGIDYYHSDAILPTPRDLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNRVTGVKTNGSKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQNAELSTFDVVGPVCESADFLGKGRELPTPAKGTGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSVSKIRHGETFEDHIRFFEGL* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2733 490 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 148 160 IPR000183 GO:0003824
Dod01g2733 490 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 343 362 IPR000183 GO:0003824
Dod01g2733 490 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 128 146 IPR000183 GO:0003824
Dod01g2733 490 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 261 274 IPR000183 GO:0003824
Dod01g2733 490 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 444 457 IPR000183 GO:0003824
Dod01g2733 490 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 107 353 IPR022644 GO:0003824
Dod01g2733 490 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 87 484 IPR009006 GO:0003824
Dod01g2733 490 Gene3D Alanine racemase 105 350 IPR029066 -
Dod01g2733 490 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 297 312 IPR022657 -
Dod01g2733 490 PANTHER DIAMINOPIMELATE DECARBOXYLASE 60 487 - -
Dod01g2733 490 Hamap Diaminopimelate decarboxylase [lysA]. 85 488 IPR002986 GO:0008836|GO:0009089
Dod01g2733 490 CDD PLPDE_III_DapDC 99 465 IPR002986 GO:0008836|GO:0009089
Dod01g2733 490 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 354 444 IPR022643 GO:0003824
Dod01g2733 490 SUPERFAMILY Alanine racemase C-terminal domain-like 328 485 IPR009006 GO:0003824
Dod01g2733 490 SUPERFAMILY PLP-binding barrel 98 354 IPR029066 -
Dod01g2733 490 PANTHER DIAMINOPIMELATE DECARBOXYLASE 1, CHLOROPLASTIC-RELATED 60 487 - -
Dod01g2733 490 TIGRFAM lysA: diaminopimelate decarboxylase 75 484 IPR002986 GO:0008836|GO:0009089
Dod01g2733 490 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 128 146 IPR022653 -
Dod01g2733 490 PRINTS Diaminopimelate decarboxylase signature 454 476 IPR002986 GO:0008836|GO:0009089
Dod01g2733 490 PRINTS Diaminopimelate decarboxylase signature 371 389 IPR002986 GO:0008836|GO:0009089
Dod01g2733 490 PRINTS Diaminopimelate decarboxylase signature 146 163 IPR002986 GO:0008836|GO:0009089
Dod01g2733 490 PRINTS Diaminopimelate decarboxylase signature 234 243 IPR002986 GO:0008836|GO:0009089
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2733 Dod-Chr1 66953046 66957475 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2733 K01586 - gmx:100809499 859.366