Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2685 ATGAGATATTTTGTGATCCTGGGCTCATCCATTGTCACACCTCCCAACCCTCCATCATCATCACCACCACCACAATCACACACTCCTTCTCCCCCCATCAAGCCCCACAACAAGCCTTCTCTTCCAAAGCTCACTCCACCATCCTCCATCTCATGCACCCTCCAAGTACCCCTCAACCACCACCACCATGCCAAGCTCCAGGACCTCGAAACGGTTCTGGAGGGCGTGCTCCGTTCTGGGGTCCACGTGCATCACGCGTCCCAGCTTGTTGTGGGGACCCGTGGCGGCAGGACGGTCCGTGCAATGATTGACACTCTGAAGAGAGTGCAGGAGCTTGGGATCTCTCTGTCCCCTCATTTTGATGGCCCCGCCATGGACACCATCGCAAGTCAGTGTCGCCACTTGGTCAAATGCGGCCACGTTCAGGACGCTGTTGAACTCATGGAGGTTCTCTCACGTTTCCGGTTATCAGTCAGAGAATTGGTTCAACCATCTGACATAATAAAACAATGTGTTCTTAGGCATAAACCAGATTTAGCTGTGAGGTATGCATGTCTTCTTCCTCATGCACACATATTATTCTGCAACATTATAAGTGAATTTGGCAAAAGGAGGGATGTAGTGTCTGCTTTGAAAGCATATGAAGCATCGAAGAAACACTTGGATAGTCCCAATATGTACATCTACCGGGCAATAATTGATGTCTGTGGTCTCTGTGGTGATTTCATGAAATCTAGGTACATATATGAGGATTTACTCAATCAGAAGATCACTCCAAATATATATGTAATCAACAGTCTCATGAATGTGAATACCCATGATCTTAGCTACACGTTAAATCTGTATCAGAATATGAAGAATCTTGGTCTGAAGCCAGATATGACATCTTATAACATCCTGCTGAAAGCATGCTGTGTTGCTGGAAGAGTTGACCTGGCCCAAGACATTTATAGGGAACTAAAGCGTTTGGAATCAGAGGGACGGCTGAAATTAGATGTTTTTACCTACAGCACGATTATAAAGGTCTTTGCGGATGCAAAAATGTGGCAAATGGCTCTAAAAATCAAGCAGGATATGCTGTCTGCTGGTGTTTCTCCTAATACTGTTGCATGGTCATCACTAATCAATGCCTGTGCACATGTGGGGCTTGTAGAGCAGGCAATTCGATTATTTGAAGAAATGCTTTTGGCTTGCTGCGAGCCTAATACACAATGTTTTAACATCATTTTACATGCATGTGTTGAAGCTTGCCAGTATGACAGGGCTTTTCGCTTTTTCTATTCTTGGAAGGGAAATAAGATGTTGGGGTCCTTTGATGAAGGGAACAATAGCAAGTTATTAGAGCATGGAGACATGCATACTGCGACTACTGTGCCAAATAGCACTTCTAGTTCACATATCTTGAGTTTTGCTGAGAGATTCCCTTTCAGACCAACAACAGCAACCTATAACATTTTACTGAAAGCTTGTGGTACTGATTACTACCATGCAAAAGCATTAATCAAGGAGATGAAAAGAGAAGGTCTCTCCCCTAACCAAATAAGCTGGTCAATTTTGATAGATATATGTGGAGGATCAGAAAATGTGGAAGGTGCCATTGAGATTTTGAATACCATGTTTGATGCTAGAATTAAACCTGATGTTGTTGCATATACAACAGCCATTAAGGTTTGTGTGGAAAGTAAGAATTTTAAGCAAGCATTATCGTTATATGAAGACATGAAAAGATATGAGATACATCCAAATTGGGTGACGTATAACACACTACTAAAGGCACGCAGTACATATGGTTCAGTACTCGAGGTGCAACAGTGCCTCGCCATATACCAGGATATGCGAAAAGCAGGGTACAGACCCAATGACTATTATTTGGAAGAATTGATTGAGGAGTGGTGTGAAGGAGTGATACAAGATAACAGAGAGAACCAAAGGGAGTTTTCTTCCAGCAATATATCTGAATTAGATAGACCCCAGAGTTTACTTCTTGAAAAAATTGCAGCACACCTGCTAAAAAGGGTAGCTGACATCCTAGCAATTGATGTTCAAGGGCTCTCAAAGGTTGAAGCTCGCTTGGTTATTCTTGCAGTTCTTCGAATGATCAAAGAGAACTATGGTTCAGGACATTCAGTGAATGATGACATCTTGATCATCATAGGAGCTACTAAAGCAGATGAAACTACAGCCGAAAACATATTAGAAGTGCAAGAGGCAATAATTAAACTCCTTCAGAATGAGCTAGGTCTTGAAGTTCTTCCAGCCAAAACCAGATTTGCACCAAGTGACACAGCAAAGTTAGAGAATCCCAGCCTTTCAAATCTCAGAATAGAAGCACTACCAGGAGAGAATGCATCACCTACAGCAATGAGTTTTCAGACCAGGAGACCTGCAGTTCTACATAGGTTGAAGGTCACCAAGAAATCATTGTACCATTGGTTGCATAGGAAAGAAAGTGTTAAATAG 2460 0.4264 MRYFVILGSSIVTPPNPPSSSPPPQSHTPSPPIKPHNKPSLPKLTPPSSISCTLQVPLNHHHHAKLQDLETVLEGVLRSGVHVHHASQLVVGTRGGRTVRAMIDTLKRVQELGISLSPHFDGPAMDTIASQCRHLVKCGHVQDAVELMEVLSRFRLSVRELVQPSDIIKQCVLRHKPDLAVRYACLLPHAHILFCNIISEFGKRRDVVSALKAYEASKKHLDSPNMYIYRAIIDVCGLCGDFMKSRYIYEDLLNQKITPNIYVINSLMNVNTHDLSYTLNLYQNMKNLGLKPDMTSYNILLKACCVAGRVDLAQDIYRELKRLESEGRLKLDVFTYSTIIKVFADAKMWQMALKIKQDMLSAGVSPNTVAWSSLINACAHVGLVEQAIRLFEEMLLACCEPNTQCFNIILHACVEACQYDRAFRFFYSWKGNKMLGSFDEGNNSKLLEHGDMHTATTVPNSTSSSHILSFAERFPFRPTTATYNILLKACGTDYYHAKALIKEMKREGLSPNQISWSILIDICGGSENVEGAIEILNTMFDARIKPDVVAYTTAIKVCVESKNFKQALSLYEDMKRYEIHPNWVTYNTLLKARSTYGSVLEVQQCLAIYQDMRKAGYRPNDYYLEELIEEWCEGVIQDNRENQREFSSSNISELDRPQSLLLEKIAAHLLKRVADILAIDVQGLSKVEARLVILAVLRMIKENYGSGHSVNDDILIIIGATKADETTAENILEVQEAIIKLLQNELGLEVLPAKTRFAPSDTAKLENPSLSNLRIEALPGENASPTAMSFQTRRPAVLHRLKVTKKSLYHWLHRKESVK* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2685 819 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 547 581 IPR002885 -
Dod01g2685 819 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 512 546 IPR002885 -
Dod01g2685 819 Gene3D Tetratricopeptide repeat domain 446 658 IPR011990 GO:0005515
Dod01g2685 819 Pfam Pentatricopeptide repeat domain 476 525 IPR002885 -
Dod01g2685 819 Pfam PPR repeat family 366 413 IPR002885 -
Dod01g2685 819 Pfam PPR repeat family 546 592 IPR002885 -
Dod01g2685 819 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 582 619 IPR002885 -
Dod01g2685 819 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Dod01g2685 819 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Dod01g2685 819 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 49 809 - -
Dod01g2685 819 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Dod01g2685 819 Gene3D Tetratricopeptide repeat domain 309 425 IPR011990 GO:0005515
Dod01g2685 819 Gene3D Tetratricopeptide repeat domain 167 308 IPR011990 GO:0005515
Dod01g2685 819 PANTHER OS03G0284900 PROTEIN 49 809 - -
Dod01g2685 819 Pfam PPR repeat 334 364 IPR002885 -
Dod01g2685 819 Pfam Pentacotripeptide-repeat region of PRORP 201 320 IPR033443 -
Dod01g2685 819 MobiDBLite consensus disorder prediction 15 42 - -
Dod01g2685 819 TIGRFAM PPR: pentatricopeptide repeat domain 334 368 IPR002885 -
Dod01g2685 819 TIGRFAM PPR: pentatricopeptide repeat domain 296 322 IPR002885 -
Dod01g2685 819 TIGRFAM PPR: pentatricopeptide repeat domain 227 261 IPR002885 -
Dod01g2685 819 TIGRFAM PPR: pentatricopeptide repeat domain 369 403 IPR002885 -
Dod01g2685 819 TIGRFAM PPR: pentatricopeptide repeat domain 549 583 IPR002885 -
Dod01g2685 819 TIGRFAM PPR: pentatricopeptide repeat domain 514 548 IPR002885 -
Dod01g2685 819 MobiDBLite consensus disorder prediction 10 46 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2685 228 669 Glycosyltransferase AT1G05670 19.955 7.31e-19 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2685 - - gmx:100794606 1197.96