Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2670 ATGATGGTAAGGTTTCTGTGTTATTTTCCTGGCTTGTTCCCTATGTCTTTTGGACAGGAATTTAGCGATCCTCGAGATGCTGATGATGCAAGATATAGCTTGGATGGCCGAGATGTCAATGGAAGTCGTATTATTGTCGAATTTGCAAAAGGGGTTCCTCGCGGTTCCCGTGAATATTTGGGTCGAGGCCCTCCTCCTGGAACTGGGCGCTGCTTCAACTGTGGCATTGATGGCCATTGGGCCCGAGATTGCAAAGCTGGGGATTGGAAGAACAAGTGTTACCGCTGTGGGGAGAGAGGTCATATAGAAAAGAACTGCAAGAACAGTCCCAAAAAGTTGAGACGTGGACGAAGTTATTCCCGTTCTCCTGTCAGGTCACGTTCACGTTCTCCTCGTCGTGGCAGAAGCCGGGATCGGAGTTACAGCCCAGAACGCAGTTACAGTCGATCGATATCCCCAGTTAGAGATGACCGAAGTCCAGTTCGTGAAGATAGATCAGAGAGTCCTCGTGATATAAGCCCAGAGCCCAAAAGTAGTCCTCAGCCCTCGAAGGCAAGGAAGCATAGTCCATCACCTGACGAAGGCAGCCCACAGGAGAGAGGTGAAGCATCTCCTGGTAATGATAGGTTGGTCATTCAGCAAGATGGATCTGACTACAGCGATAGTCCCAGAGGGAAGAGCAGAAGCCCCCCTAGTCCAGCAAGGGACCACGATGATGGTGGCTATGATAACCCTAAAGGTGAAGGCCATGGCCCGAGCCCCAGCCCTGGAGATGATGACAGAAGCCCGTTTGATGAAGATGACAATCATCGCAATCTACCCAGAGGCAGCGAGTCACCTTAA 843 0.5089 MMVRFLCYFPGLFPMSFGQEFSDPRDADDARYSLDGRDVNGSRIIVEFAKGVPRGSREYLGRGPPPGTGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLRRGRSYSRSPVRSRSRSPRRGRSRDRSYSPERSYSRSISPVRDDRSPVREDRSESPRDISPEPKSSPQPSKARKHSPSPDEGSPQERGEASPGNDRLVIQQDGSDYSDSPRGKSRSPPSPARDHDDGGYDNPKGEGHGPSPSPGDDDRSPFDEDDNHRNLPRGSESP* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2670 280 MobiDBLite consensus disorder prediction 104 280 - -
Dod01g2670 280 Pfam Zinc knuckle 91 108 IPR001878 GO:0003676|GO:0008270
Dod01g2670 280 Pfam Zinc knuckle 70 85 IPR001878 GO:0003676|GO:0008270
Dod01g2670 280 SMART c2hcfinal6 70 86 IPR001878 GO:0003676|GO:0008270
Dod01g2670 280 SMART c2hcfinal6 92 108 IPR001878 GO:0003676|GO:0008270
Dod01g2670 280 SUPERFAMILY Retrovirus zinc finger-like domains 61 109 IPR036875 GO:0003676|GO:0008270
Dod01g2670 280 Gene3D - 90 123 - -
Dod01g2670 280 Gene3D - 61 89 - -
Dod01g2670 280 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 20 261 - -
Dod01g2670 280 ProSiteProfiles Zinc finger CCHC-type profile. 70 85 IPR001878 GO:0003676|GO:0008270
Dod01g2670 280 SUPERFAMILY RNA-binding domain, RBD 20 58 IPR035979 GO:0003676
Dod01g2670 280 MobiDBLite consensus disorder prediction 253 280 - -
Dod01g2670 280 ProSiteProfiles Zinc finger CCHC-type profile. 92 108 IPR001878 GO:0003676|GO:0008270
Dod01g2670 280 PANTHER SPLICING FACTOR, PUTATIVE-RELATED 20 261 - -
Dod01g2670 280 MobiDBLite consensus disorder prediction 230 245 - -
Dod01g2670 280 MobiDBLite consensus disorder prediction 135 172 - -
Dod01g2670 280 MobiDBLite consensus disorder prediction 110 134 - -
Dod01g2670 280 MobiDBLite consensus disorder prediction 210 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2670 Dod-Chr1 66150389 66153810 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2670 K12896 - gmx:100813237 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2670 01 66150389 66153810 Dod01g2670 01 66150389 66153810 ECH