Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2662 ATGGATCACACCCCTCTCTCGGAGCCCACGACACCAACCACCCCAAGGCCCACCCTCTTACTCTCCACTTCCGGCAAGGCCCTTCTCGTCTCCAACTCCAACAAATCCCTCGCCCTCTCCAACTCCGGCCAGCGCTTCGACTCCTTCTCCAGGAAGAAGTATGTCAAGCAGGTCACCGGCCGCCACAACGACACCGAGCTCCACCTCGCCGCCCAGCGCGGTGACGCCATCGCGGTCCACCAAATCTTAGCCGAGATCGACGCGCAGATGATCGGCACGCTCAGCGGCGCAGAGTTTGATGCCGAGGTTACGGATATAAGGTCGGCGATCGTCAACGAGGTCAACGAGTTGGGTGAGACCGCTCTCTTCACCGCCGCGGAGAAGGGACACCTTGATGTCGTTGAGGAGTTCCTACCTTACACCACCGAAGAGGCCCTCTCCTTCAGAAATCGGTCCGGTTCGATAACTTGCACATTGCTGCTAACCAAGGTCATAAAGGTGCTGCTAGACCATGATCCGGAGCTAATCAAGACGTTTGAGCAATCAAATGCAACCCCTCTTATCTCTGCAGCTACAGGGGGTCATGCGGATGTTGTTGAACACCTGCTGTCGAAAGATTCTAGTCAGTTGGAGATAGCTAAGACCAACGGGAAGAATGCACTCCATTTGGCTGCCCGGCAAGGACATGTTGAGAACGTGAGTGGGATTGCCCAGGAGCTAAAGAAGTTGCACAGAGATGGACTCAACAATGCCACCAACTCGGTGACTGTGGTCGCTGTGCTGTTTGCAACAGTTGCATTGGCAGCAGTCTTCACGGTTCCTGGTGGGGATGATGTGAGGGGAAAGGCCGTGGTGGCCCACTCTATTTCTTTCAAGGCCTTCTTCATATCCAATGCTATTGCACTCTTTACTTCATTGGCTGTTGTGCTGGTTCAGATCACAGTCGTTAGAGGGGAGACAAAAACTGAAAGGAGAGTTGTGGAAGTGATCAACAAGATGATGTGGTTAGCCTCTGTTTGTACCTCTGTTTCATTCATTGCAGCATCTTATATAGTCGTTGGTCGGCGAAGCAACTGGGCTGCGATCCTTGTTACTGTTGTCGGGGCTATTATAATGGGTGGTGTTCTTGGCACCATGACTTACTATGTCTTGAAATCCAAACATCACAGAAGAGTGAGGAAGAAAGTGAAGACCTCAAGGACTAGAAAATCTTCATGA 1218 0.5213 MDHTPLSEPTTPTTPRPTLLLSTSGKALLVSNSNKSLALSNSGQRFDSFSRKKYVKQVTGRHNDTELHLAAQRGDAIAVHQILAEIDAQMIGTLSGAEFDAEVTDIRSAIVNEVNELGETALFTAAEKGHLDVVEEFLPYTTEEALSFRNRSGSITCTLLLTKVIKVLLDHDPELIKTFEQSNATPLISAATGGHADVVEHLLSKDSSQLEIAKTNGKNALHLAARQGHVENVSGIAQELKKLHRDGLNNATNSVTVVAVLFATVALAAVFTVPGGDDVRGKAVVAHSISFKAFFISNAIALFTSLAVVLVQITVVRGETKTERRVVEVINKMMWLASVCTSVSFIAASYIVVGRRSNWAAILVTVVGAIIMGGVLGTMTYYVLKSKHHRRVRKKVKTSRTRKSS* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2662 405 Pfam Ankyrin repeats (3 copies) 163 234 IPR002110 GO:0005515
Dod01g2662 405 PANTHER CASKIN 30 230 - -
Dod01g2662 405 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1 231 402 - -
Dod01g2662 405 Pfam Domain of unknown function 247 352 IPR026961 -
Dod01g2662 405 PANTHER CASKIN 231 402 - -
Dod01g2662 405 Gene3D - 32 154 IPR036770 -
Dod01g2662 405 SUPERFAMILY Ankyrin repeat 57 234 IPR036770 -
Dod01g2662 405 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1 30 230 - -
Dod01g2662 405 SMART ANK_2a 182 211 IPR002110 GO:0005515
Dod01g2662 405 SMART ANK_2a 117 146 IPR002110 GO:0005515
Dod01g2662 405 SMART ANK_2a 216 245 IPR002110 GO:0005515
Dod01g2662 405 SMART ANK_2a 62 91 IPR002110 GO:0005515
Dod01g2662 405 Gene3D - 155 266 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2662 Dod-Chr1 66065442 66068220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2662 67 402 Miscellaneous Gene Families AT3G09550 41.975 6.47e-78 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2662 - - twl:119985940 298.516