Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2601 ATGGAGAACCCTTCCGAGTTTCTTGGCTCCAAAGGGTTGATTAAAAGACAAGAATTTTTGAGGATCATAGTTCAGTGCCTGTACTCATTACGGTACTGTCGTTCTGCATCATTTTTGGAATTGGAATCTGGTGTTTCATATAAGTCCCAAGAGTCTCAGCTGCTTGAATCACATGCATTGAATGGGAATTGCAATGGTTGCATCAGTGTTCTCAATTCTATAAAGGATGTGTCGAGTGAAACTATGAAATCTGCCATTTTTCTTGTCCTTAGACAGTGTTATGTGGAGCATCTGAATTGTGGCAAGGTTGCTTTGGCTTTGGATGTGTTAAGGAAAAAGATTTCTCCCTTGGATGTGGACAAGTGCAAGGTTCACAGCCTGGCTTATACTGCGATTTCCTTAAAGGATAGGGAGTTAGGTGACATAGGTGGTTGTAATGTTGTACCTGATTTAAGAAGAAAGTTGTTAATAGATTTGGAAAACTTGTTCCCACCTCCAATTTCATTGCCTAAAAGAAGATTGGAGCATTTAGTTGAAACTGCTGTTACTTCCTGGGTTGATTCGTGTATGTATCATAACACGTCAAATCTTGTTTCACTTTATGAGGATCATCAATGTGGCAGGGATCAGATTCCTACTAGAAACATTGAGACAATGCCTATACATAGAAATGAAGTTTCGTTTGTTCAATTTTCTAATAATGGGGAGTTCCTAGCCTCGTCATCCAATGATTGCACCATCATATGGGAGGTGAAGGAACTTGGGAACTTGAGTTACTTGACATTGAAACGCAGGCTTTGTGATCACAAGCATGCAGTATCTTTTGTAGCATGGAGTCCAGATGACACCAAGTTGCTTACTTGTGGGAACACTGGATTATGCAAGCTGTGGAATGCTGAAACAGGTGCATGCAAGCACACATTTGGGAATCAAGCCTTTGTTATCAGCTCTTGTGCCTGGTTTCCCAACTCAAAGCAGTTCGTGTGTGGCAATTCTGACCCTAGCCCTGTAAAGGGCATCTGCATGTGGGATTGTGATGCCAACATCATAAATGTATGGCAATGGCGAGGACTGCAGATGCCCAAAGTGCTCGATCTTGCTGTTACTCCAGATGGTGAGTATCTTATCAGTGTATTCTCGAATAATGTAATTTGGATCCGGCATATGGGAACCAATGCTAGACGAACCATTTTAGAGGCGCATCCAATCACATCCCTTTCAGTTTCAGGAGATAGTAAGTTCTTCATTGTCAATCTAAACTGCCAGGAGATTCATATGTGGGATGTGGCAGGAAAATGGTATAAGCCATGGAGGTTCATGGGCCACAAGCAGCACAAGTGTGCAATAAGGTCATGCTTTGGTGGATGGAATAGCAAGTTTATTGCCAGTGGTAGTGAGGATTCACATGTATATATTTGGAACTGCCGGAACTTACGAGCCTATAGAGGTCTTATCTGGGCACACCATGACTGTGAACTGTGTGAGCTGGAACCCCAAAAGACCAAAGCTGTTGGCATCTGCAAGCGATGA 1530 0.4248 MENPSEFLGSKGLIKRQEFLRIIVQCLYSLRYCRSASFLELESGVSYKSQESQLLESHALNGNCNGCISVLNSIKDVSSETMKSAIFLVLRQCYVEHLNCGKVALALDVLRKKISPLDVDKCKVHSLAYTAISLKDRELGDIGGCNVVPDLRRKLLIDLENLFPPPISLPKRRLEHLVETAVTSWVDSCMYHNTSNLVSLYEDHQCGRDQIPTRNIETMPIHRNEVSFVQFSNNGEFLASSSNDCTIIWEVKELGNLSYLTLKRRLCDHKHAVSFVAWSPDDTKLLTCGNTGLCKLWNAETGACKHTFGNQAFVISSCAWFPNSKQFVCGNSDPSPVKGICMWDCDANIINVWQWRGLQMPKVLDLAVTPDGEYLISVFSNNVIWIRHMGTNARRTILEAHPITSLSVSGDSKFFIVNLNCQEIHMWDVAGKWYKPWRFMGHKQHKCAIRSCFGGWNSKFIASGSEDSHVYIWNCRNLRAYRGLIWAHHDCELCELEPQKTKAVGICKR* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2601 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 307 IPR001680 GO:0005515
Dod01g2601 509 PANTHER WD REPEAT-CONTAINING PROTEIN 26 9 483 - -
Dod01g2601 509 SUPERFAMILY WD40 repeat-like 210 485 IPR036322 GO:0005515
Dod01g2601 509 PANTHER WD REPEAT PROTEIN 26-RELATED 9 483 - -
Dod01g2601 509 Pfam WD domain, G-beta repeat 268 298 IPR001680 GO:0005515
Dod01g2601 509 Pfam WD domain, G-beta repeat 441 474 IPR001680 GO:0005515
Dod01g2601 509 Pfam WD domain, G-beta repeat 220 247 IPR001680 GO:0005515
Dod01g2601 509 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 48 105 IPR006595 -
Dod01g2601 509 ProSiteProfiles LIS1 homology (LisH) motif profile. 15 47 IPR006594 GO:0005515
Dod01g2601 509 SMART WD40_4 212 250 IPR001680 GO:0005515
Dod01g2601 509 SMART WD40_4 348 388 IPR001680 GO:0005515
Dod01g2601 509 SMART WD40_4 259 298 IPR001680 GO:0005515
Dod01g2601 509 SMART WD40_4 301 344 IPR001680 GO:0005515
Dod01g2601 509 SMART WD40_4 391 428 IPR001680 GO:0005515
Dod01g2601 509 SMART WD40_4 432 474 IPR001680 GO:0005515
Dod01g2601 509 Gene3D - 210 506 IPR015943 GO:0005515
Dod01g2601 509 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2601 Dod-Chr1 65236804 65242445 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2601 183 376 Miscellaneous Gene Families AT5G08390 23.858 9.24e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2601 K22382 - gmx:100818922 683.33