Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2597 ATGACGGGGTTTCCCAGGGTTCGTGATCACGGCTCCCTTGCATCTTCATCCTCCCATAATTCTAATAGCAGCGGTAGCAATGTATTTAGTTTGCTAGTGCGGAGAGAGATTTCGCCTAGAACGAAACACGTGGTAAAACGGCATTGGGGAGATGCTTCTAGATCAAAATCTGGCTCTTACTCCCGTCCTAAAAATGTAGGGAGAGATGCAAGACGTGGCCTTGTCTCATGGGTTGAAGCTGAGTCATTGTGGCATTTGTCAGCGAAGTATTGTCCTTTATTGCCTCCCCCGCGCTCTACTATTGCAGCAGCATTTAGTCCAGATGGAAAAGTTCTTGCATCCACGCATGGTGACCACACAGTAAAGATAATTGATTGTGAAACTGGAAGTTGCTTAAAGGTGTTAGTTGGACATAGGAGGACACCTTGGGTGGTTAGGTTCCATCCATTACATGCACAAATACTTGCTAGTGGGAGCTTGGATCAAGAAGTTCGTTTATGGGATGCTAACACATCAGAGTGCATAATATCTCATCATTTCTATCGTCCCATTGCATCCATTGCTTTTCATGCCAAGGGGGAAATAATCGCTGTTGCTTCAGGCCACAAGCTGTATATATGGCACTACAACAACAAAGGTGAAGCAGCCTCACCAACATTTGTGTTGAAGACAAGGCGCTCCCTTCGAGCTGTGCATTTTCACCCACACGCCGCACCATATCTCTTAACCGCTGAGGTCAATGATCTTGATTCTTCAGATTCCTCAATGACGGAGGCAACATCTCTTGGTTATTTACAATATCCTCCACCTGCTGTTTTTGTCACAAACATTCATCCTAGGGAGCATATTAGCCTGTCTAGTGAACTACCATATGTTTCATTGCCTTTCCTCTACATGCCATCATATGCTGTTGATGAGTCAAGACCAGAAGTTCAGCACACAAGTCATGACGTTGGCTCAGGTAGCATACAGATTGGATCTTCTGCCATGGTGCAGTTTCAAACGGACACAAATGCAACTGAGCAATGTGATACTACAGTGTCTCCCATGGAGACATTCTCTGAGGTGCCCCCTAGCTCTCAAACTGGTGCAGACTATCCTGCTCATGCTACTTTATCTAATGGAATGGGAATTGGCGTCAATAACCTTATAGTGGATGGTATGGAGACTGATGAAACTGAACATGCTGAAGGAAGCCAACATGGAAACTCTAGTAATGCCTATTCTCTTAATGGTGTGCTGCATGGACTGTCTAGACAAACTGCGAATCGTGAGGTTCTCTCAGAGTTTAGTCAATTTCATCAGTTTTTGCCTTCAAGAGACCCAAGTGGATGGGAGTTACCTTTTCTGCAAGGATGGTTAATGGGTCAGAGTCAAGCTGGTGTTCCCTCAATGGTTCCTAACATGGGTGTTAGTTGTGAGAGTGTAGGTCAACAGATAGCATCAAACCTTTCTACTTCTGGTGTTGATGTAGCAATGCCTGGCAGTATCAGCATACCTGGATCTTCCGTGAGATCAGGTTTACGGAATCATTTTTCACAATACCGTGTACCTGTATCGGAATCTGGAAATCTTGCTGCCTCTATTGGTTCCCCGCATGATGGGTCTGATATCCAAACCATCATAAGTCGAATTCAGTCAGAACTTGCCACATCGATGACTGCAGTGACGGCTGCAGAGTTGCCCTGCACTGTGAAGTTAAGAGTATGGTCACATGACATAAAAAATCCCTGCACTCCACTAAATCCTGACAGATGCCGTCTAACTATTCCGCATGCTGTCCTCTGCAGTGAAATGGGTGCCCATTTTTCACCATGCGGTAGATTCTTAGCTGCCTGTGTTGCATGTATGCTTCCTCATATAGAAGCTGATCCTGGATTACAAACTCTGGTACACCAAGAGCCTGGCATTGCAACATCACCAACACGTCATCCGATCTCAGCTCACCAAGTTATGTATGAGCTGAGGATATATTCCCTTGAGGAGGCTACATTTGGATCGGTGCTTGCATCACGGGCAATTAGAGCAGCTCATTGTCTGACATCAATTCAGTTCTCACCTACATCTGAGCACATACTACTTGCTTATGGTCGACGTCATGGTTCTCTTCTTAAAAGCATTGTCATTGACGGAGAAACAACATTTCCTATATATACAGTGCTAGAGGTATATAGAGTGTCAGATATGGAACTTGTTAGGGTGCTTCCTAGTGCAGAAGATGAGGTCAATGTGGCATGCTTTCATCCTTTTGCTGGTGGAGGGCTAGTTTATGGAACAAAGGAAGGAAAGCTTAGGATCCTACAGTATGATGGTGCTCATACCGTGAATGGCACTGGGCCAAGTTACTTTCCTGACGAGACTATCATTGGAATCAGTCAGTGA 2382 0.4505 MTGFPRVRDHGSLASSSSHNSNSSGSNVFSLLVRREISPRTKHVVKRHWGDASRSKSGSYSRPKNVGRDARRGLVSWVEAESLWHLSAKYCPLLPPPRSTIAAAFSPDGKVLASTHGDHTVKIIDCETGSCLKVLVGHRRTPWVVRFHPLHAQILASGSLDQEVRLWDANTSECIISHHFYRPIASIAFHAKGEIIAVASGHKLYIWHYNNKGEAASPTFVLKTRRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTEATSLGYLQYPPPAVFVTNIHPREHISLSSELPYVSLPFLYMPSYAVDESRPEVQHTSHDVGSGSIQIGSSAMVQFQTDTNATEQCDTTVSPMETFSEVPPSSQTGADYPAHATLSNGMGIGVNNLIVDGMETDETEHAEGSQHGNSSNAYSLNGVLHGLSRQTANREVLSEFSQFHQFLPSRDPSGWELPFLQGWLMGQSQAGVPSMVPNMGVSCESVGQQIASNLSTSGVDVAMPGSISIPGSSVRSGLRNHFSQYRVPVSESGNLAASIGSPHDGSDIQTIISRIQSELATSMTAVTAAELPCTVKLRVWSHDIKNPCTPLNPDRCRLTIPHAVLCSEMGAHFSPCGRFLAACVACMLPHIEADPGLQTLVHQEPGIATSPTRHPISAHQVMYELRIYSLEEATFGSVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTFPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRILQYDGAHTVNGTGPSYFPDETIIGISQ* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2597 793 MobiDBLite consensus disorder prediction 43 67 - -
Dod01g2597 793 Pfam WD domain, G-beta repeat 102 125 IPR001680 GO:0005515
Dod01g2597 793 Pfam WD domain, G-beta repeat 129 168 IPR001680 GO:0005515
Dod01g2597 793 MobiDBLite consensus disorder prediction 1 26 - -
Dod01g2597 793 ProSitePatterns Trp-Asp (WD) repeats signature. 155 169 IPR019775 -
Dod01g2597 793 MobiDBLite consensus disorder prediction 11 26 - -
Dod01g2597 793 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 1 792 - -
Dod01g2597 793 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 135 173 - -
Dod01g2597 793 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 96 770 IPR011047 -
Dod01g2597 793 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 1 792 - -
Dod01g2597 793 Gene3D - 53 257 IPR015943 GO:0005515
Dod01g2597 793 ProSiteProfiles Trp-Asp (WD) repeats profile. 135 177 IPR001680 GO:0005515
Dod01g2597 793 SMART WD40_4 128 168 IPR001680 GO:0005515
Dod01g2597 793 SMART WD40_4 87 125 IPR001680 GO:0005515
Dod01g2597 793 SMART WD40_4 171 208 IPR001680 GO:0005515
Dod01g2597 793 SMART WD40_4 728 768 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2597 Dod-Chr1 65218432 65226097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2597 69 207 Miscellaneous Gene Families AT5G08390 31.757 8.01e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2597 - - gmx:100794246 1358.58