Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2576 ATGGCGTCTTCGTACCCGGGTTCCGTCAGTGCTGCCCAGGTGGGTTCGTACTTCGTTGGACAGTACTATCAGGTTCTAAGGCAACAGCCGAATCTGGTTCACCAGTTCTATGCTGATTCAAGCAGCATGGTTCGCGTCGATGGGGATTCCACCGACACTGCATCCGATGTCCTGCAAATTCACTCAATTGTCAGCTCGCTGAATTTGACTACAATTGAGATCAAGACGATCAATTCTCTTGATTCTTGGGATGGAGGTGTGCTCGTAGTGGTCTCAGGTTTTGTCAAGATGAAGGATTTTGGTGTGAGACGGAAGTTTGTGCAAACCTTCTTTCTTGCCCCTCAGGAGAAAGGTTACTTCGTACTGAATGATATATTTCATTTTGTTGATGATGAAGTAGTGTACCCTAATCCGGTATCAGGGACCACCGAGAAGATTGACACACAACCACATGTATCCACGTCTCTTGTAGAGCCACTTGCTACCGACTATGGTCTGGAGGAAGAAGCTAGGGAATATGTCAACTCAGTGCATATAGATGATGATCCAGTGGACAAGTATAGTCTTCCTGAGCAACAGCAGCAGCAACTACAAGAAGATTTTGAAGCTGAAATTGTGGTGGAAGAAACTCCTGCAGAGGAAGCATCTCCAACAATTCAACATGTTGCACATACCATCCATGAAGCCCCTGCTTCTCACATTGAAGAATTTCTGGAGGAGCCTCCTAAGAAAACTTATGCATCTATTCTACGAGTCGCTAGAGGGCAATCAGGGTTGTCAGCTGCGCCACAACATGCTCCGCAATATTCATTTAAAAGCACTGCTCCTTCTTCTGAGTTAAATCATGTTGCTCAGCCTGCTGCTCAGCAGTCAAGCTCTGCATCTGCATATGTTCCCGAGTCTGGGGTTGAGGCAGCAGAGGAAGCCTATGGAGTTGAAGAAGAAGGTGAGGTGACTTCTGTCTATGTGAGAAACTTGCCTCCTGATGTTACTGAATCCGAGATTGATCAGGAATTTAAAAATTTTGGCAAAATTAAGCTGGACGGAATATTCATTAGGGTTCGAAAGGAGATTGGAGTTTGCTATGCTTTTGTGGAATTTGAAGACATTATCGGTGTTCAAAATGCTCTTCAGGCATCTCCCATACACTTGGCTGGTAGACAAGTATACATAGAAGAGCGGAGACCAAACAGTGGCAGTGCAGCTCGGGGAGGAAGAAGGGGAAGGGGCAGAGGCAGTTATCAAATAGATGCTCCAAGGGGTCGTTTTGGTGGTAGGAGCTTGGGCAGGGGAAATAATCAGGAAGCTTCAGACTATAACAGACTAAGAGGCGATGGTTATCCTCAGCGTGGTCCGCGATAA 1362 0.4626 MASSYPGSVSAAQVGSYFVGQYYQVLRQQPNLVHQFYADSSSMVRVDGDSTDTASDVLQIHSIVSSLNLTTIEIKTINSLDSWDGGVLVVVSGFVKMKDFGVRRKFVQTFFLAPQEKGYFVLNDIFHFVDDEVVYPNPVSGTTEKIDTQPHVSTSLVEPLATDYGLEEEAREYVNSVHIDDDPVDKYSLPEQQQQQLQEDFEAEIVVEETPAEEASPTIQHVAHTIHEAPASHIEEFLEEPPKKTYASILRVARGQSGLSAAPQHAPQYSFKSTAPSSELNHVAQPAAQQSSSASAYVPESGVEAAEEAYGVEEEGEVTSVYVRNLPPDVTESEIDQEFKNFGKIKLDGIFIRVRKEIGVCYAFVEFEDIIGVQNALQASPIHLAGRQVYIEERRPNSGSAARGGRRGRGRGSYQIDAPRGRFGGRSLGRGNNQEASDYNRLRGDGYPQRGPR* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2576 453 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 9 447 IPR039539 -
Dod01g2576 453 PANTHER GB|AAD20086.1 9 447 - -
Dod01g2576 453 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 396 IPR000504 GO:0003723
Dod01g2576 453 MobiDBLite consensus disorder prediction 280 300 - -
Dod01g2576 453 MobiDBLite consensus disorder prediction 280 298 - -
Dod01g2576 453 SUPERFAMILY RNA-binding domain, RBD 316 425 IPR035979 GO:0003676
Dod01g2576 453 SMART rrm1_1 320 392 IPR000504 GO:0003723
Dod01g2576 453 SUPERFAMILY NTF2-like 10 131 IPR032710 -
Dod01g2576 453 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Dod01g2576 453 MobiDBLite consensus disorder prediction 395 453 - -
Dod01g2576 453 CDD RRM_SF 321 392 - -
Dod01g2576 453 Gene3D - 300 447 IPR012677 -
Dod01g2576 453 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Dod01g2576 453 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 379 IPR000504 GO:0003723
Dod01g2576 453 CDD NTF2 10 130 IPR018222 -
Dod01g2576 453 Gene3D - 5 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2576 Dod-Chr1 64977941 64984404 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2576 - - gmx:100787900 687.567