Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2563 ATGGATGGTTCTGGAAGAGCGAGCAGTAGTAAGCTACTGAACCCATGGATGCTCAACTTCCAGAAGCTCGCTCTCGAACTCAAGTGCCCTCTCTGTTTGAGCTATTTCAAGAGACCGGTTTTGCTACCATGCAACCACTTGTTCTGCAACTCGTGTTTGGCTGATTGCACAACGGCTGGTTCTGAATGTGCTGTTTGTAAAACTAAGTATACTCAAATAGATATACGGCATGTGCCTTTTGTGGAGAACATGGTTGGAATCTATAGGAGCTTGGATGCCACCTTTTCTGCTAGTCTGTTTCAGCAACGTTCTTCTGATGATGCGAGGGTTTTGGAGCCATGCCGGACATCTCTCAATTTAGCTTATAGCAACAAAAAAGCGGATAAGATTGTGGCAAAATCTCCTACTTCTGATGAGATTGGGGTTGGGAAGAATCGTAAATTCAAGATGAGTGGTGTTGCGTTGCGTGATAAAGCTGAGGAAATTGGGGGCCGTGAAGACTGTGGAGTTGTAGAAATGGATGTAAATCAATTGACACAATCAGCACCATATAGCCCACCATTTTGTGACACCAAAGGTTCTGATAATGACTGCAGTGATCAAGACAGTGAACATCCCTTATCTTCCGAGAGATTGGAGAATTCTTCATTGAAGAGATCATGTACAGCAAATGTAAATTTGAAGGGAAAAATGACACAATTGAGGTCTGAAAGTTCAGCCTCTGAAACTGAGGGTCTTACAAGAGAGCTAAAGAGACAGAAAATTCTTAGCCATGGAAATGATCAACTTAGAACTGCGCATCAAAATAAGCTTGTGAACTCCCACCCTGATCTTGACCTTAAATCTGGAAAGGACCCTGGTACAGTGTTGCCTGCAAATTCAGATAACTCATTTACAAGTACAGGCATATGTTCATTTTGCCAATCCTCTAAAATTTCAGAGGCTACTGGCCCAATGCTGCATTATGCAAATGGCAAGTTGGTTACTGGAGATGCAGCAGAGCAACCCAATGTCATACATGTGCACAGAATTTGCATTAATTGGGCACCACAAGTGTACTTTGTTGATGAAGCTGTTAAAAATTTGAAGGCAGAAGTGGCAAGGGGAGCAAAGCTTAAATGCAGCAAATGTGGTCTAAAGGGAGCTGCTCTTGGCTGTTATGTCAAATCCTGTAGAAGAACCTATCATGTTCCTTGTGCAATTGACATCCCAAATTGCCGCTGGGATCATGGGGATTTTCTGTTGCTCTGTCCTGGTCATTCTCATTTCAGATTTCCAAATGAGAAAACCAAGTCTAAGAAACAGGCGACTCATGAGCATCCCGCTTCATCTCACCCGCCTTCTGAGAAGTTAAGCTCCCTGGGAGCTTCCCTGGATGTTGATAAAAAATTGGTCTTTTGTGGATCTGCTTTATCGACTGAAGATAAGGTACTTCTGATCAAATTTGCAAGCAAGGTTGGTGGCAGAGTGTCCAAGTGCTGGACCTCTGAAGTCACACATGTGATTGCTGCTACTGATGAAAATGGAGCGTGCTCCAGGACATTGAAAGTTCTCATGGCAATTCTAAATGGACGATGGATTCTCAAAATGGACTGTAAGTTGTTAAGGTTCTTTTTCTTATATTGA 1626 0.4287 MDGSGRASSSKLLNPWMLNFQKLALELKCPLCLSYFKRPVLLPCNHLFCNSCLADCTTAGSECAVCKTKYTQIDIRHVPFVENMVGIYRSLDATFSASLFQQRSSDDARVLEPCRTSLNLAYSNKKADKIVAKSPTSDEIGVGKNRKFKMSGVALRDKAEEIGGREDCGVVEMDVNQLTQSAPYSPPFCDTKGSDNDCSDQDSEHPLSSERLENSSLKRSCTANVNLKGKMTQLRSESSASETEGLTRELKRQKILSHGNDQLRTAHQNKLVNSHPDLDLKSGKDPGTVLPANSDNSFTSTGICSFCQSSKISEATGPMLHYANGKLVTGDAAEQPNVIHVHRICINWAPQVYFVDEAVKNLKAEVARGAKLKCSKCGLKGAALGCYVKSCRRTYHVPCAIDIPNCRWDHGDFLLLCPGHSHFRFPNEKTKSKKQATHEHPASSHPPSEKLSSLGASLDVDKKLVFCGSALSTEDKVLLIKFASKVGGRVSKCWTSEVTHVIAATDENGACSRTLKVLMAILNGRWILKMDCKLLRFFFLY* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2563 541 MobiDBLite consensus disorder prediction 182 216 - -
Dod01g2563 541 Pfam PHD-like zinc-binding domain 342 420 - -
Dod01g2563 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 99 IPR013083 -
Dod01g2563 541 MobiDBLite consensus disorder prediction 428 445 - -
Dod01g2563 541 Pfam Zinc finger, C3HC4 type (RING finger) 26 72 - -
Dod01g2563 541 MobiDBLite consensus disorder prediction 195 212 - -
Dod01g2563 541 SUPERFAMILY RING/U-box 26 89 - -
Dod01g2563 541 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Dod01g2563 541 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 10 531 - -
Dod01g2563 541 Pfam BRCA1 C Terminus (BRCT) domain 462 530 IPR001357 -
Dod01g2563 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 423 IPR013083 -
Dod01g2563 541 ProSiteProfiles Zinc finger RING-type profile. 29 67 IPR001841 -
Dod01g2563 541 SUPERFAMILY BRCT domain 464 530 IPR036420 -
Dod01g2563 541 CDD BRCT_Bard1_rpt1 464 531 - -
Dod01g2563 541 ProSiteProfiles Extended PHD (ePHD) domain profile. 301 421 IPR034732 -
Dod01g2563 541 SMART BRCT_7 458 536 IPR001357 -
Dod01g2563 541 MobiDBLite consensus disorder prediction 428 452 - -
Dod01g2563 541 CDD ePHD 339 420 - -
Dod01g2563 541 ProSiteProfiles BRCT domain profile. 464 529 IPR001357 -
Dod01g2563 541 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 10 531 IPR031099 GO:0006281|GO:0006974
Dod01g2563 541 Gene3D BRCT domain 460 531 IPR036420 -
Dod01g2563 541 SMART ring_2 29 66 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2563 Dod-Chr1 64833122 64837587 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2563 K10683 - gmx:100784883 729.939