Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2539 ATGGGTTCTCTGCCTGCATTCGCAGTCGGGCTTTCAGTTCCACCCAAACACGCCCTTGTTAATAACAACAACAACGACGAGAATGACCACATTGACGAAACCACCCTTGAGAGCCTCTTCAGGACGCAGCAGAGCCACCTGAACTTCTTCTTCGACAAAATGGACCACTCCCAAACCCTAGCCTTCGCGCGCGCGCTCCTCCACGCCGCCGGCACCATCTTCTTCACCGGCGTCGGAAAGTCCGGCTTCGTCGCCAACAAGATCTCCCAGACGCTCGTCTCCCTCGGCGTCCGATCCGCCTTCCTCTCACCTCTCGACGCTCTCCACGGCGACATCGGGATCCTCTCCGCAGCCGACATCCTCGTCCTCCTCAGCAAGTCCGGCGCCACCGACGAGCTCCTCCGCCTCGTCCCCTGCGCCAGGGCGAAAGGCGCCAGGCTCATCGCCGTCACGTCCGTCCCTGGGAGCGCTCTCGAAGGGATCTGCGACATGACGGTGCATTTGCCGTTGGAGAGGGAGCTTTGTCCGTTTAACCTTGCGCCGGTGACTTCGACGGCGATACAGATGGTGTTTGGGGACACGGTGGCGATCGCGCTCATGGGAGCAAGGAATCTCAGCAAGGAGGACTACGCCGGGAACCACCCTGCCGGCAGGATCGGCAAGAGGCTTATCTTCAAGGTAAAAGATCTCATGAAGAAGCAGGATGAGCTTCCTGTTTGCAGGGAATCAGATTTAATTATGGATCAACTTGTGGAGCTGACCAGTAAAGGATGTGGATGCCTGCTTGTTATAGATGATCATCATCATCTGATTGGGACATTTACAGATGGCGATCTTCGCCGTACTCTCAAAGCTAGTGGGGAGGCCATCTTCAAACTCACTGTGGGGGAAATGTGCAACAGGAAGCCAAGAATTATTGGTCCAGAAGCTATGGCAGTGGAAGCCATGAAGAAGATGGAAGCACCTCCATCACCCGTCCAGTTTTTGCCCGTCATAGATGATGACAATATCCTGATTGGGATTGTCACGCTGCACGGTTTGGTTTCAGCTGGGTTATGA 1059 0.5552 MGSLPAFAVGLSVPPKHALVNNNNNDENDHIDETTLESLFRTQQSHLNFFFDKMDHSQTLAFARALLHAAGTIFFTGVGKSGFVANKISQTLVSLGVRSAFLSPLDALHGDIGILSAADILVLLSKSGATDELLRLVPCARAKGARLIAVTSVPGSALEGICDMTVHLPLERELCPFNLAPVTSTAIQMVFGDTVAIALMGARNLSKEDYAGNHPAGRIGKRLIFKVKDLMKKQDELPVCRESDLIMDQLVELTSKGCGCLLVIDDHHHLIGTFTDGDLRRTLKASGEAIFKLTVGEMCNRKPRIIGPEAMAVEAMKKMEAPPSPVQFLPVIDDDNILIGIVTLHGLVSAGL* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2539 352 CDD SIS_Kpsf 71 198 IPR035474 -
Dod01g2539 352 Gene3D - 28 222 - -
Dod01g2539 352 ProSiteProfiles CBS domain profile. 231 290 IPR000644 -
Dod01g2539 352 SUPERFAMILY SIS domain 45 351 IPR046348 GO:0097367|GO:1901135
Dod01g2539 352 PIRSF KdsD_KpsF 20 352 IPR004800 GO:0005975|GO:0016853
Dod01g2539 352 ProSiteProfiles SIS domain profile. 62 205 IPR001347 GO:0097367|GO:1901135
Dod01g2539 352 Pfam SIS domain 67 197 IPR001347 GO:0097367|GO:1901135
Dod01g2539 352 Pfam CBS domain 295 350 IPR000644 -
Dod01g2539 352 Pfam CBS domain 227 284 IPR000644 -
Dod01g2539 352 TIGRFAM kpsF: sugar isomerase, KpsF/GutQ family 71 342 IPR004800 GO:0005975|GO:0016853
Dod01g2539 352 Gene3D - 223 350 IPR046342 -
Dod01g2539 352 PANTHER - 18 352 - -
Dod01g2539 352 CDD CBS_pair_SIS_assoc 223 348 - -
Dod01g2539 352 ProSiteProfiles CBS domain profile. 299 352 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2539 Dod-Chr1 64552248 64554875 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2539 K06041 - gmx:100805755 553.518