Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2513 ATGGGGACTCCAGCACAGAAGCAGAAGCCATGGAAGGCGGAGTACGCGAAGTCAGGGCGATCGTCATGCCGGACGTGCAAGGTCACCATCGCCAGCGAGCACTTCCGCCTCGGCAAGATGGTCCAATCCACCAAGTTCGACGGCATCATGGCGATGTGGAATCATGCTGATTGCATATTGAAGAAACCCAACCAGATAAAATCAATTGATGATGTTGAAGACTTAGAGTCGCTTCGTTGGGAAGATCAGCAGAAGATCAGAAAATATGTTGAGAGTGGCGCGCCACCAAAGTCAAAATCTGTCAAAAATACTGAGTGTGGTATTGAAGTTTCACAGAATTCTCGTGCCTCATGCAAGCACTGTGGCCAAAAAATCATCAAAGGAGAGGTCCGCATATCTACTAAGCCTGATGGTCAAGGTGCTAAAGGTTTGGCTTGGCATCATGCCAAGTGTTTCATGGAGTTATCACTGTCAATTCAAGTTGATAAGTTATCAGGATGGGATAGTCTTTCTTCTTCTGATCAATCAGCCATCAGTGGCTTAGCTAAGAAGGGTCCTCTTGGGGAGGCAGGTGGTAGTGGTACAAAAATTGAGACTGAAGAGGCTAAAGAATCCTCACAACAAACCAAGTCAAAAAATGGCACAAAGCGTGGGAAGGATGCTGATGGTGAGCAGAAGTCAAAAGTTGCAAAGGTGAAGGGAAATGTATCTGCAGGAAGGGCAGCATCAGCGAAAGATGTTAATGACTCAGGGGAAGCAAGTGATGTGGAGAATAGACTGGAGGCACAGAGCAAAGAATTATGGGCTCTAAAAGATAAGCTTAAAAAGCATGTAACAACATCAGAGTTGCGTGAAATGCTGGAAGCCAATAACCAAGATTCAAGTGGATCAGAACTTGATTTGCGTGATCGCTGTGCTGATGGAATGATGTTTGGAGCACTTGGTCATTGCCCAATATGCTCTGGCTATCTTCGTTATTCTGGAGGAATGTACCGGTGCAATGGCTACATTTCTGAATGGAGTAAATGTTCCTACTCTACATGTGAACCAAAGCGTCTTGAAGGGAAGTGGAAAATCCCCGAGGAAACAGACAACCAGTTCCTTAAAAAGTGGTTCAAATCTCAAAAAGGGAAGAAACCCATTAGGATATTACCCGCACCATCAGCAAGCAATCCTGCTGAAAGTCAAATTGCTGCTTCCCAGAATCAATCAACAAACGGTGAAAGTCTGGGAGAGTTGAAAGTTGCTATCTGTGGATTTCCTAAAGACTCTATTGGGGAATGGAAACGCAAAATTGAAGGCATTGGTGGGGTGCTTCATGCAAAAGTGAAGAAAGATACTAACTGCTTGGTTGTCAGTGGAGCGCTCACTGATGAAGCTGAGATGAAGAAGGCAAGGAGGATGAAGATACCAATAGTCAGAGAGGACTATTTGGTTGACTGTATAAAAAAAGGGAAGAAGCTTCCCTTTGGTATGTACAAAGTTGAAATGATTGGTGAGGCTTCTAGCATGGTCACTATCAAAGTGAAAGGGCAAAGTGCTGTTCATGAGGCTTCTGGCCTACAGGATTCTGGCCACATACTCGAGGAAGGGAAAAGCATCTATAATACAACTTTGAATATGTCTGATTTATCTACTGGTGTTAACAGCTACTATGTTCTCCAAATAATCCAAGAAGACAAGGGGTCAGGATGCTATCTGTTTCGCAAATGGGGCCGCGTGGGAAATGACAAGATTGGAGGAACCAAACTGGAGGAACTGCCAAAATCAGATGCAATCAGGGAATTCAAAAGATTATTCTATGATAAGACTGGAAACCCTTGGGAGGCTTGGGAGCAAAAGACTATTCAGAAGCAACCTGGAAGATTCTTCCCATTGGATATTGATTATGGAGTTAACAAACAGGTCCCAAAGAAAGATAAAAGGGACGAAGACAGCAAGCTACCCCCTGCGTTAAGAGAATTGATGAAGATGCTCTTCAATGTGGAAACATACAGAGCTGCCATGATGGAATTTGAAATTAATATGTCCGAAATGCCACTTGGGAAACTGAGCAAGAGTAATATCCAAAAGGGTTTTGAAGCATTAACAGACATACAGAATCTCTTGGAAGATAAGATTGGCAACCCAACAGCCCGGGAAAGCTTGCTTGTTGATGCCAGCAATCGGTTCTTTACTTTGATCCCTTCTATTCATCCACATATCATTAGGGATGAGGATGATTTTAAGTCAAAGGTGAAAATGTTAGAAGCCCTTCAAGACATCGAAATAGCCTCAAGATTAGTTGGATTTGATGCAAATAGTGACGACTCCATTGATGATAATTATAAGAAGCTCCGCTGTGCTATAAATCCTCTTCCTCATGATAGTGAAGATTATCGTTTGATTGAGAAGTTTCTCCATAATACTCATGCCCCCACCCACATGGACTGGAGTCTTGAGCTAGAAGAAGTTTTCTCACTTGAAAGGGAAGGAGAATTTGATAAGTTTGCTCCTTACAGGGAGAAACTTGGTAACAGAATGCTTTTGTGGCATGGTTCGAGGTTGACAAATTTTGTGGGTATTCTTAGCCAAGGACTCAGAATTGCACCTCCTGAGGCCCCGGCCACTGGCTACATGTTTGGCAAAGGCGTTTACTTTGCTGACCTAGTCAGCAAGAGTGCTCAGTATTGCTTCACGGATAAGAAAAATCCTGTCGGTCTAATGCTTTTGAGTGAAGTTGCCCTTGGAAATGTCTATGAGCTCAAGAAAGCTAAGTATATGGATAAACCTCCTGAAGGAAAGCACTCTACTAAAGGACTGGGCAAGAAAATGCCTCAAGAATCAGAATATGTAAAGTGGAGGGGTGATGTCACCGTTCCATGTGGCAAACCTGTGTCATCAAATGTCAAGACTTCTGAGCTCATGTACAATGAGTATATTGTGTATAATACTGCCCAAGTTAAGATGCAATTCTTGTTGAAGGTGAAGTTCCATCACAAGAGGTGA 2988 0.4324 MGTPAQKQKPWKAEYAKSGRSSCRTCKVTIASEHFRLGKMVQSTKFDGIMAMWNHADCILKKPNQIKSIDDVEDLESLRWEDQQKIRKYVESGAPPKSKSVKNTECGIEVSQNSRASCKHCGQKIIKGEVRISTKPDGQGAKGLAWHHAKCFMELSLSIQVDKLSGWDSLSSSDQSAISGLAKKGPLGEAGGSGTKIETEEAKESSQQTKSKNGTKRGKDADGEQKSKVAKVKGNVSAGRAASAKDVNDSGEASDVENRLEAQSKELWALKDKLKKHVTTSELREMLEANNQDSSGSELDLRDRCADGMMFGALGHCPICSGYLRYSGGMYRCNGYISEWSKCSYSTCEPKRLEGKWKIPEETDNQFLKKWFKSQKGKKPIRILPAPSASNPAESQIAASQNQSTNGESLGELKVAICGFPKDSIGEWKRKIEGIGGVLHAKVKKDTNCLVVSGALTDEAEMKKARRMKIPIVREDYLVDCIKKGKKLPFGMYKVEMIGEASSMVTIKVKGQSAVHEASGLQDSGHILEEGKSIYNTTLNMSDLSTGVNSYYVLQIIQEDKGSGCYLFRKWGRVGNDKIGGTKLEELPKSDAIREFKRLFYDKTGNPWEAWEQKTIQKQPGRFFPLDIDYGVNKQVPKKDKRDEDSKLPPALRELMKMLFNVETYRAAMMEFEINMSEMPLGKLSKSNIQKGFEALTDIQNLLEDKIGNPTARESLLVDASNRFFTLIPSIHPHIIRDEDDFKSKVKMLEALQDIEIASRLVGFDANSDDSIDDNYKKLRCAINPLPHDSEDYRLIEKFLHNTHAPTHMDWSLELEEVFSLEREGEFDKFAPYREKLGNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLVSKSAQYCFTDKKNPVGLMLLSEVALGNVYELKKAKYMDKPPEGKHSTKGLGKKMPQESEYVKWRGDVTVPCGKPVSSNVKTSELMYNEYIVYNTAQVKMQFLLKVKFHHKR* 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2513 995 Pfam Poly(ADP-ribose) polymerase catalytic domain 790 991 IPR012317 GO:0003950
Dod01g2513 995 Gene3D - 780 995 - -
Dod01g2513 995 ProSiteProfiles WGR domain profile. 524 623 IPR008893 -
Dod01g2513 995 SUPERFAMILY BRCT domain 410 495 IPR036420 -
Dod01g2513 995 ProSiteProfiles PARP alpha-helical domain profile. 645 763 IPR004102 GO:0003950
Dod01g2513 995 Gene3D - 636 779 IPR036616 GO:0003950
Dod01g2513 995 SMART PADR1_2 301 354 IPR012982 -
Dod01g2513 995 ProSiteProfiles BRCT domain profile. 429 495 IPR001357 -
Dod01g2513 995 PANTHER POLY [ADP-RIBOSE] POLYMERASE 1 52 990 - -
Dod01g2513 995 Gene3D - 239 312 - -
Dod01g2513 995 CDD WGR_PARP1_like 525 630 - -
Dod01g2513 995 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 105 189 - -
Dod01g2513 995 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 8 99 - -
Dod01g2513 995 Pfam BRCA1 C Terminus (BRCT) domain 413 482 IPR001357 -
Dod01g2513 995 Gene3D BRCT domain 400 500 IPR036420 -
Dod01g2513 995 MobiDBLite consensus disorder prediction 213 229 - -
Dod01g2513 995 SUPERFAMILY WGR domain-like 503 628 IPR036930 -
Dod01g2513 995 PANTHER DNA LIGASE 52 990 - -
Dod01g2513 995 SMART WGR_cls 535 618 IPR008893 -
Dod01g2513 995 Pfam PADR1 (NUC008) domain 303 352 IPR012982 -
Dod01g2513 995 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 11 94 IPR001510 GO:0003677|GO:0008270
Dod01g2513 995 SMART BRCT_7 408 485 IPR001357 -
Dod01g2513 995 SMART zf_PARP_3 14 91 IPR001510 GO:0003677|GO:0008270
Dod01g2513 995 SMART zf_PARP_3 109 183 IPR001510 GO:0003677|GO:0008270
Dod01g2513 995 MobiDBLite consensus disorder prediction 389 405 - -
Dod01g2513 995 Pfam WGR domain 535 613 IPR008893 -
Dod01g2513 995 SUPERFAMILY ADP-ribosylation 779 994 - -
Dod01g2513 995 MobiDBLite consensus disorder prediction 383 405 - -
Dod01g2513 995 Pfam Poly(ADP-ribose) polymerase, regulatory domain 646 776 IPR004102 GO:0003950
Dod01g2513 995 ProSiteProfiles PARP catalytic domain profile. 770 995 IPR012317 GO:0003950
Dod01g2513 995 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 106 178 IPR001510 GO:0003677|GO:0008270
Dod01g2513 995 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 109 179 IPR001510 GO:0003677|GO:0008270
Dod01g2513 995 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 14 90 IPR001510 GO:0003677|GO:0008270
Dod01g2513 995 Gene3D - 313 373 IPR038650 -
Dod01g2513 995 PIRSF NAD_ADPRT 4 995 IPR008288 GO:0003677|GO:0003950|GO:0005634|GO:0008270|GO:0051287
Dod01g2513 995 Gene3D - 102 186 IPR036957 GO:0003677|GO:0008270
Dod01g2513 995 MobiDBLite consensus disorder prediction 180 258 - -
Dod01g2513 995 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 646 780 IPR036616 GO:0003950
Dod01g2513 995 Coils Coil 253 273 - -
Dod01g2513 995 CDD parp_like 646 990 - -
Dod01g2513 995 Gene3D - 3 101 IPR036957 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2513 Dod-Chr1 64193348 64202937 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2513 K24070 - gmx:100815900 1665.59