Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2440 ATGCTTGCAATAAGAAAGCTCAAAATCGAGCCAGATATCCCTTTTGCTTTATATTTCTTGGTTGCTAATCGCAATTATAGCGGAGCCCAAGTTTCCAACAACAGGAGTCACCTGTCTATTGTTAAATATGTTAGCCATTATTTAGCCAACTCAAGTTCACAAGCAGCTCTATTGGGATCAGAGAATAAAGTCACCCGTCAACGAGTATACTTCTCAAGTGTGGCTGAAACAATCCTTGTCCAGGCTCAAGACCCAGCCAAAGTAAGCATGGAAATTCAAAATGCTATCATTGGGAACCAATTAGATTATTCATGGAAGTTATTTGAGCAGCATATGCGCATGGAAGGATTTCCTAGAAAATCTGTCTTCAGCAAGCTTGTTACAAGTTATGTGGAAGGCCTTGATACGAAATGGCTGGCGAACGCTTATGAATTGGTGGAACGAGCTATTGTGGAAGGTAAACAAAATTTGTTGGAAAAGGAGGTGCTTATCTACCTTGCCTATGGTCTTGCGAAAGCTGGACAACCTGTTCCTGCATCAACTATCTTGAGAAAGATGATAGATATGGAGCTTTTCCCTCCAGTCACTGCTTGGTCTGCTGTTTTGGCCCACGTGTCACAGACAGCAGAAGGAAGTTACCTTGCTGCTGAGTTGATTCTTGAAATAGGTTATTTGTTCCAGAACAATAGAGTGGATCCACGTAAAAAGAGCAATGCACCTTTGATAGCCATGAGGCCTAACGCTAATGCTTTTAACATTGCTTTGGCAGGGTGTCTCTTATTTGAGACATCTAGGAAGGCAGAGCAGCTTCTTGATATGATGCCTCGAATTGGTGTCAAAGCTGATGCAAACTTACTGATAATAATGGCATGTGTATATGAGAGAAATGGGCGAAGAGAAGAGCTTAAGAAGCTGCAGAGGTACATAGAGGAAGCTCCAAATCTAACTGATACTCAGTTCCGACAATTCTATAACTGTTTGCTTACCTGCCATTTGAAACTTGGGGATCTGGATTCTGCATCAAACATGGTTTTGGAAATGCTTAGGAAAGCAAAGGAAGCAAGAAATTCTCTTGCAGCTGCTAAATTTGTGTTCGATGCAGCGACAACTGGTAATGACTATTCTCCTGGACTGGCTTCTCTGCAGAGTTTGAGAAACACTGAGGATTTAGATAGTTTCGAAAATAACAAGCCACTAAGGAATGCTGTCTTATGTTATGATGAGTTCTCCAAAGATCGGAATTTCTTAAAACTTGAAGCAGAATCAAAGGCTGTTCTTGATTTTTTACTAGCTAAGTTGCAGAAGCAAGTTGACTTGATTACAACTGAACATGGTATTCTTCAACCTACTGAAACAATTTATGTGAAACTAGTTAAAGCTTTTCTAGAGGCTGGTAAGACCAAGGATTTGGCAGCGTTTCTTCTCAGAGCAGAGAGAGAAGATTTCCCATTTTCCAATGATAATTCAGCCTTGGTTCATGTCATTGATTCATGTATTTCACTTGGATGGTTGGATCAAGCACATGACCTCCTTGATGAGATGCGTCTAGCTGGAGTTAAAACTGGTTCATCTGTATATGCCTCTCTTTTGAAAGCATATTGTCGAGCAAATAGGGCAGCGGATGTTACATCACTTTTGAGAGATGCTAAGAAGGCTGGTATCCAGCTTGACTCAAGCTGTTATGAGGCAATGATCCAATCCAGGGTGCTCCAGCAAGATACACTTGGAGCTCTCCAACTATTTAAAGAGATGAAAGAAGCTAGGATTCCAAAAGTTAGTCAGCAAGACTCTGGAATGCTGGCAAAAAGTTGTGCAGGGACAGATGATACTGGGCTGGTGACAAAGCTGTTGCAGGAAATCAAGGAAGGACCGAGAGTGGATTATGGAGTTCATGACTGGAATAACATAATCCACTTTTTTTGTAAAAAGAGACTGATGCAAGATGCAGAAAAGGCTCTGATGAAGATGAGAAGCTTAGGCCACACACCAAATGCACAAACTTTCCATTCTATGGTCACTGGGTATGCTGCCATTGGAGGGAAATATCTTGAGGTGACAGAGCTGTGGGGTGAGATGAAATCTCTTGCTTCTGCAATCTCAATGAAGTTTGATCAGGAACTTCTTGATTCTGTGCTGTATACTTTTGTGAGGGGTGGATTCTTTGTTCGAGCCAATGAAGTTGTGGCGATGATGGAAAGAGGAAACATGTTTGTTGACAAGTACAAGTACCGAATGTTATTCTTGAAATATCACAAAACACTTTATAAAGGCAAGGCTCCAAAATTTCAGAAAGAATCCCAACTAAGCAAAAGAGAAGCAGCACTGGCTTTTAAAAGATGGGTAGGCTTGAGTTGA 2355 0.4119 MLAIRKLKIEPDIPFALYFLVANRNYSGAQVSNNRSHLSIVKYVSHYLANSSSQAALLGSENKVTRQRVYFSSVAETILVQAQDPAKVSMEIQNAIIGNQLDYSWKLFEQHMRMEGFPRKSVFSKLVTSYVEGLDTKWLANAYELVERAIVEGKQNLLEKEVLIYLAYGLAKAGQPVPASTILRKMIDMELFPPVTAWSAVLAHVSQTAEGSYLAAELILEIGYLFQNNRVDPRKKSNAPLIAMRPNANAFNIALAGCLLFETSRKAEQLLDMMPRIGVKADANLLIIMACVYERNGRREELKKLQRYIEEAPNLTDTQFRQFYNCLLTCHLKLGDLDSASNMVLEMLRKAKEARNSLAAAKFVFDAATTGNDYSPGLASLQSLRNTEDLDSFENNKPLRNAVLCYDEFSKDRNFLKLEAESKAVLDFLLAKLQKQVDLITTEHGILQPTETIYVKLVKAFLEAGKTKDLAAFLLRAEREDFPFSNDNSALVHVIDSCISLGWLDQAHDLLDEMRLAGVKTGSSVYASLLKAYCRANRAADVTSLLRDAKKAGIQLDSSCYEAMIQSRVLQQDTLGALQLFKEMKEARIPKVSQQDSGMLAKSCAGTDDTGLVTKLLQEIKEGPRVDYGVHDWNNIIHFFCKKRLMQDAEKALMKMRSLGHTPNAQTFHSMVTGYAAIGGKYLEVTELWGEMKSLASAISMKFDQELLDSVLYTFVRGGFFVRANEVVAMMERGNMFVDKYKYRMLFLKYHKTLYKGKAPKFQKESQLSKREAALAFKRWVGLS* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2440 784 Pfam PPR repeat family 631 676 IPR002885 -
Dod01g2440 784 TIGRFAM PPR: pentatricopeptide repeat domain 633 665 IPR002885 -
Dod01g2440 784 TIGRFAM PPR: pentatricopeptide repeat domain 525 557 IPR002885 -
Dod01g2440 784 Gene3D Tetratricopeptide repeat domain 87 375 IPR011990 GO:0005515
Dod01g2440 784 Gene3D Tetratricopeptide repeat domain 573 780 IPR011990 GO:0005515
Dod01g2440 784 Pfam PPR repeat 494 519 IPR002885 -
Dod01g2440 784 Pfam PPR repeat 324 350 IPR002885 -
Dod01g2440 784 PANTHER OS10G0422566 PROTEIN 19 783 - -
Dod01g2440 784 Gene3D Tetratricopeptide repeat domain 384 572 IPR011990 GO:0005515
Dod01g2440 784 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 629 663 IPR002885 -
Dod01g2440 784 Pfam Pentatricopeptide repeat domain 544 589 IPR002885 -
Dod01g2440 784 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Dod01g2440 784 PANTHER BNAC05G43320D PROTEIN 19 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2440 Dod-Chr1 63305058 63312016 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2440 494 746 Miscellaneous Gene Families AT4G11690 21.344 4.15e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2440 - - gmx:102661989 1273.07