Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2435 ATGGAAGAAGCAGAAGCTGAATCCAACAGAGACGTTGAAGTAGCTCCGGCACTCATCGCCGTTCACCCCGACCAAACCTCCGTCGCCGTCGCCGTTGGACCGGACCTCCGCGCCTTCGACCTCCTTGCTGGTTCCGCAGCTTCTTTAGTTGATGACCACGGTCCACCCTCTCGCAAGGACTCAATCAGAGCCATTCGTTTCGGAGCAAAGGGAAAGCTCTTCGTATCCGCCGGTGATGATAAGACCGTCAAGGTCTGGTCGCCGCAATCTTGGCGTTGCATCTGTACCGTGTCATCGGAAAAGAGGGTGAGTGCAGTTGCCATAAGCAACGACGGGTCGTACGTGTGTTTCGCTGACAAGTTTGGGGTTGTGTGGGTTGTGGATCTCGCTGGGCTTGATGATGGAAACGGGCCATTAGTTGATAAGAAAGCGACGCCGCTTCTTTCTCACTATTGCAGTATCATCACTAGCTTGGAATTTTCCCCGGATGGACGGTTTATTCTAAGTGCCGATCGGGATTTTAAAATTCGGGTTACTAATTTTCCCAACAAGCCCTTAAATGGAGCTCACGAGATACAAAGTTTCTGCCTTGGTCATACGGAGTTTGTGTCCTGCATTGCCTTTGTTCACGCTCAGGAATGCCCTCAAGGCCTTCTTCTCTCTGGCAGTGGTGATTCAACAGTCCGATTGTGGGATATCTCATCTGGAGCACTCCTAGATACTTGTGAGGTTGCAGTTAAGGCAGAACTTATAGATTCTAATGGTCAAGCAGAGGAGCATGGTCATGCTATTACTGATTTGTGCCCCACCCAGGATGGTTTGCTTGTTGCTGTGGCCATTCAGAGCTTGCAAGGAATAGTATTGTTGAGCTGCGATATTTCGGCCCAAACACTTGCTGTTGCCAAGGTGGTTTCTATGGCTGGAGAGGCCTTTGTCCCTACCTGCCTGGGGTACAGCCCCTCTACAAGGGAATTGTGGATGGTAACAGGTGTGTCTAGTCTACCCGGTAGTAGTTATCCCTCTCTGGCTTGCGTCCGAGTAATTTCTGATATCGACATTGAGCAAGAGCCAGTTGTTCTGGGAGATGACAAGATACCTGGGGGAGAAAAGCTCCTAGAAACGTTGCAGGGAACTGCATCTGTCGATGAGAGTGCTTTTTTGGCAGCTGCCGAAGCTGTCAAAACAGCAATGTGCAACCTATTGATAAAAAAACAATACCCTGCAGATAATAGAGAATCTAGGAAGAAAACCAGAAATGATAGAAAACTAAAAATGTAA 1278 0.4898 MEEAEAESNRDVEVAPALIAVHPDQTSVAVAVGPDLRAFDLLAGSAASLVDDHGPPSRKDSIRAIRFGAKGKLFVSAGDDKTVKVWSPQSWRCICTVSSEKRVSAVAISNDGSYVCFADKFGVVWVVDLAGLDDGNGPLVDKKATPLLSHYCSIITSLEFSPDGRFILSADRDFKIRVTNFPNKPLNGAHEIQSFCLGHTEFVSCIAFVHAQECPQGLLLSGSGDSTVRLWDISSGALLDTCEVAVKAELIDSNGQAEEHGHAITDLCPTQDGLLVAVAIQSLQGIVLLSCDISAQTLAVAKVVSMAGEAFVPTCLGYSPSTRELWMVTGVSSLPGSSYPSLACVRVISDIDIEQEPVVLGDDKIPGGEKLLETLQGTASVDESAFLAAAEAVKTAMCNLLIKKQYPADNRESRKKTRNDRKLKM* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2435 425 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 25 417 IPR028884 GO:0036265
Dod01g2435 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 55 87 IPR001680 GO:0005515
Dod01g2435 425 Gene3D - 56 330 IPR015943 GO:0005515
Dod01g2435 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 196 236 - -
Dod01g2435 425 PANTHER WD40 REPEAT PROTEIN 4 17 422 IPR028884 GO:0036265
Dod01g2435 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 241 IPR001680 GO:0005515
Dod01g2435 425 SUPERFAMILY WD40 repeat-like 19 327 IPR036322 GO:0005515
Dod01g2435 425 Pfam WD domain, G-beta repeat 60 87 IPR001680 GO:0005515
Dod01g2435 425 Pfam WD domain, G-beta repeat 196 232 IPR001680 GO:0005515
Dod01g2435 425 Pfam WD domain, G-beta repeat 149 178 IPR001680 GO:0005515
Dod01g2435 425 ProSitePatterns Trp-Asp (WD) repeats signature. 219 233 IPR019775 -
Dod01g2435 425 SMART WD40_4 188 232 IPR001680 GO:0005515
Dod01g2435 425 SMART WD40_4 46 87 IPR001680 GO:0005515
Dod01g2435 425 SMART WD40_4 141 180 IPR001680 GO:0005515
Dod01g2435 425 SMART WD40_4 90 128 IPR001680 GO:0005515
Dod01g2435 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 55 87 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2435 62 381 Miscellaneous Gene Families AT5G08390 22.552 3.85e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2435 K15443 - gmx:100786310 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2435 01 63264773 63267756 Dod01g2435 01 63264773 63267756 ECH