Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2391 ATGGCGAATCTTATGCAATCATTCTCAATGATCCCTTGCAACCCCTACAAATACCGAAATATCAAATGTTTATGCTCTCACGAACTCCCTATCCAAAGGAAACACCAACTCGGGTTTCAAAACCCCGTTAGCCGCTTTTCCCACAATCCCACTCCCAAATTGCGCGCCACTTCACGATTGTCCGTTGAGCCACAACTGAATACCGTTCCTTCCAAATCCGAGGATCTGAAGACGGCATTGAATTATCTGTTCAGGACAGAAATTGGTGGTGGTTTGGTCAGAGTTTATGTCACAAAGAATAACAACAATGTTAGGTATTGTGTGTTAATTGAGGTTTCATCCTTGGACCTAGGTGGTAGTGGCCAAGGTGAAAAAAGGCTTGTGTTGTGTTGGGGCGTGTACAGAGCCGATTCATCGCGATTCGTGGAACTTGATTCGAAGAGCTCGAATGTAGATGCTGGGGCAGGGATGAATCTGAGCCAGTTTAAGCACAATTCTGGAGGGAAGTTTGTTGTTGAGTTGGAATTTGATGCTAAGCAAGTTCCCTTGTACTTGTCATTTTACTTGAAATCGTTGTTAGGTATTGGTGAGTCGAGTGAATTAGAAATTAGGAGCCATAGGAGAACGAATTTTTGTGTGCCGGTAGGTTCTCTTCCGGGGTACCCGGCTCCTATGGGTCTGTCTTTTAGTCCTGATGGTTCAATGAACTTTTCCCTTTACTCAAGGCATGCAGAGGGTGTTGTTTTGTGCTTGTATGATGATACTGGTGTGGAGAAACCTGCTCTAGAGCTTGATCTGGACCCTTATGTCAATCGGTCAGGGGACATCTGGCATGTCGCATTTGAGAGTGCCTGGACTTTTGTGAGCTATGGTTATCGCTGCAGGGGGGGACTTGTAAGGAGAGACAAGGATGATGGTTATGCTGAGCCTGTTCTTTTGGACCCTTATGCTAAGGTTATTGGGAATTCTTTTTCTAATGGTCATGGATCAGTGAAGAGTCTAGGACGGTTGGGCAAGGAACCTGATTTTGATTGGGGTGATGATTGTCATCCAAATTTGTCTATGGAAAAGCTGGTGGTGTATAGGTTGAATGTCGAGCGCTTTACACAGCACAAGTCCAGTGAACTTCCTAGTGATTTGGCTGGGACCTTTTCTGGTTTGGCTAATAAGGCGCAGCATTTTGAAGATCTGGGGGTGAATGCCGTTTTGTTGGAGCCGGTTTTCACATTTGATGAGAAGAAGGGACCATATTTTCCCTGTCACTTTTTCTCATTAATGCACATTTATGGACCATCTGGTGTTCCTGTATCTACTATCAACTCTATGAAGGGGATGGTTAAGACTATGCATGCCAAGGGGGTAGAAGTTCTCATGGAAGTTGTTTTCTCCCATACTGATGAGGTTGGTGCTCTGCAAGGAATTGATGACTCGTTGTACTACTATGCAGATGGAGTTGGTGATTTGAAGACACAGAGTGCTTTGAACTGTAACTATCCTATAGTGCAAAACTTGATTCTGGATAGCCTTCGGCATTGGGTAACCGAGTTTCACATTGATGGCTTCTCTTTTATAAATGCTTCACATCTGTTGAGGGGTTTTAATGGAGAATGCTTGTCTCGACCTCCATTGGTTGAAGCAATTGCTTTTGACCCAGTACTCTGGAAGACTAAAATCATTGCAGAATGCTGGGATCCTCATGACATGTTAGCAAAGACAACCCGCTTCCCTCATTGGATGAGATGGGCTGAAATAAATACAAATTTTTGTAGTGATGTGAGAAACTTTTTAAGGGGTGAAAGTCTTATTAGCAACCTCGCAACAAGGCTTTGTGGGAGTGGAGACATGTTTTCTGATGGACGAGGACCTGCATTCTCTTTCAATTACGTTGCCAGGAGTTTTGGTCTTTCTCTTGTGGACTTGGTCAGCTTCAGTAGTGCTGAGCTAGCTCCTGAATTGAGTTGGAACTGTGGAGAAGAAGGACCTACTAACAAAACCGGCGTCCTTGAAAGACGACTCAAACAAATCCGCAATTTCCTCTTCATCTTGTTTGTGTCATTAGGAGTACCTGTTCTGAACATGGGAGATGAGTGTGGTCAGTCTTCGGGTGGTTCTCCTGCATACAGTGACATAAAACCTTTCAACTGGAGTGCTTTGGGAACAGGTTTTGGCAAACAAACCACACAATTCATTTCCTTTTTAAGTTCATTGAGGAAGAGGCGGAGTGATCTTCTTCAGAGCAGGAGCTTCTTGAAAGAAGAAAGCATTGAATGGCACGGGAGCGATGGGGCTCCACCAAGATGGGAAGATCCATCCTGCAAGTTCCTGGCCATGATTTTGAAGTCTGAAAAAATGGAGCACCCAGAGAGCCCTGTATCTTCTGATTTATCAGGGGATTTATTTATTGCTTTCAATGCAGCTGATCATCCAGAAACTCTAGTTTTGCCCGTGCCTCCGGAAGGGACGTCATGGTATCGTCTAGTTGATACAGGTCTTCCATTTCCTGGATTTTTCTCAACCGGTGGTGACTCTGTGCCTGAGCAGATGGCAGGATTGTTTACTTACCAAATGAAGTCCCACAGCTGCACTTTATTTGAGGCAAGCAATAAAAGCAGTTAA 2616 0.4438 MANLMQSFSMIPCNPYKYRNIKCLCSHELPIQRKHQLGFQNPVSRFSHNPTPKLRATSRLSVEPQLNTVPSKSEDLKTALNYLFRTEIGGGLVRVYVTKNNNNVRYCVLIEVSSLDLGGSGQGEKRLVLCWGVYRADSSRFVELDSKSSNVDAGAGMNLSQFKHNSGGKFVVELEFDAKQVPLYLSFYLKSLLGIGESSELEIRSHRRTNFCVPVGSLPGYPAPMGLSFSPDGSMNFSLYSRHAEGVVLCLYDDTGVEKPALELDLDPYVNRSGDIWHVAFESAWTFVSYGYRCRGGLVRRDKDDGYAEPVLLDPYAKVIGNSFSNGHGSVKSLGRLGKEPDFDWGDDCHPNLSMEKLVVYRLNVERFTQHKSSELPSDLAGTFSGLANKAQHFEDLGVNAVLLEPVFTFDEKKGPYFPCHFFSLMHIYGPSGVPVSTINSMKGMVKTMHAKGVEVLMEVVFSHTDEVGALQGIDDSLYYYADGVGDLKTQSALNCNYPIVQNLILDSLRHWVTEFHIDGFSFINASHLLRGFNGECLSRPPLVEAIAFDPVLWKTKIIAECWDPHDMLAKTTRFPHWMRWAEINTNFCSDVRNFLRGESLISNLATRLCGSGDMFSDGRGPAFSFNYVARSFGLSLVDLVSFSSAELAPELSWNCGEEGPTNKTGVLERRLKQIRNFLFILFVSLGVPVLNMGDECGQSSGGSPAYSDIKPFNWSALGTGFGKQTTQFISFLSSLRKRRSDLLQSRSFLKEESIEWHGSDGAPPRWEDPSCKFLAMILKSEKMEHPESPVSSDLSGDLFIAFNAADHPETLVLPVPPEGTSWYRLVDTGLPFPGFFSTGGDSVPEQMAGLFTYQMKSHSCTLFEASNKSS* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2391 871 CDD E_set_GDE_Isoamylase_N 224 362 IPR044505 -
Dod01g2391 871 Pfam Alpha amylase, catalytic domain 382 468 IPR006047 GO:0005975
Dod01g2391 871 Gene3D Glycosidases 339 752 - -
Dod01g2391 871 Gene3D - 754 871 IPR013780 -
Dod01g2391 871 Coils Coil 733 753 - -
Dod01g2391 871 SUPERFAMILY Glycosyl hydrolase domain 752 866 - -
Dod01g2391 871 SUPERFAMILY (Trans)glycosidases 341 743 IPR017853 -
Dod01g2391 871 SMART aamy 362 740 IPR006047 GO:0005975
Dod01g2391 871 Gene3D Immunoglobulins 212 335 IPR013783 -
Dod01g2391 871 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 224 317 IPR004193 GO:0004553|GO:0005975
Dod01g2391 871 PANTHER GLYCOGEN DEBRANCHING ENZYME 56 869 - -
Dod01g2391 871 CDD AmyAc_plant_IsoA 354 745 IPR044096 GO:0019156|GO:0019252
Dod01g2391 871 SUPERFAMILY E set domains 219 350 IPR014756 -
Dod01g2391 871 PANTHER ISOAMYLASE 2, CHLOROPLASTIC 56 869 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2391 Dod-Chr1 62516609 62519646 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2391 19 871 Glycoside Hydrolase AT1G03310 54.809 0.0 953
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2391 K01214 - gmx:100777953 1291.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2391 01 62516609 62519646 Dod01g2391 01 62516609 62519646 ECH