Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2284 ATGACACAAATGGCCAAGCCACTACTCTTCTTGTATTTCCTCTTCCTATTTCAAACCCTCACCCAATCACCCCTCGCCACGTCACACCCTCCGAACCCCCTCCCCATCATCCTCTCCGTCGCCGACTTCGGAGCCGCCGGCGACGGCCTCCGCCATGACACGGCGGCCATCCAGTCCGCTATCGACGCCTGCCCCACCGGTGGCCCCTGCCGCGTCACCTTCCCGGCGCCGGGAAGGTACCTGACGGCCACCGTGTTCCTGAAATCCGGCGTAGAGCTGAACGTGGAGCCCGGGGCCGCCGTCGTGGGCGGCACCAGGCTGGAGGACTTTCCAGAGGATCGGTCGCGGTGGTACGTGGTGGTGGCGGAGAACGCGACGGACGTTGGGATCGGCGGCGGCGGAGTGGTGGAGGGACAGGCGGAGAAGTTCGTTGTGAGAGAGGATCCGAGGAAGAACGTGATGGTGAGCTGGAACCAGACAGGGGCGTGTTTGGGAGACGAATGCAGACCCAGGCTGATCGGATTCCTAGGCTGCAACAACGTTAGGGTTTCCAACATTACGCTCAACCAACCTGCTTACTGGTGCTTACACATAGTACGGAGTAACGACATAACCATTCAGGATATTTCAATTTATGGGGACTTCAATATTCCAAACAACGATGGTATTGACATAGAGGACTCAAACAACACAATTATCACACGATGCCACATTGATACAGGGGATGATGCTATCTGTCCAAAGTCATACACAGGCCCCCTTTACAACCTCACAGTCACCAATTGTTGGATTCGGTCCAAATCTTCCGCAATTAAATTTGGAAGTGCCAGTTGGTTTGATTTCAAGTATTTTTTGTTTGACAATATCACCATTGTAGATTCTCACAGAGGGCTTGCATTCCAGATCCGTGATGGAGGAAATGTAAGTGACATTGTCTTCTCAAACATAAATATTAGCACAAGATACTATGATCCATTATGGTGGGGGAGAGCGGAGCCTATCTATGTCACAACTTGCCCAAGAAACTCAAAATCAAAGGAGGCTTCAATCTCAAACATACTTTTCACTAACATCACAGCAAATTCTGAAAATGGCATCTTCCTATCTGGTTCAAAGGGAGGGTTGTTAAGGAATTTGACATTCATTGACATGAATATCACTTATAGAAGGTTCACCAGTTATGCTGGTGGATTGTTGGACTATAGACCAGGGTGCCAAGAATTGGTGAAGCACAGGACTGCCGGCATGGTGATGGAGCACATTGAAGGTCTCGAGGTTAAAAATGTAGAAATGAGATGGTCAAATGAGGAACTAGAGCAGTGGAATAATCCTTTGGAGTTCAAACCATCTACTGTGAATAACGTCACTTTCCTTAATTTTAATTCTGGTTTGTACACAAATAGCAAGTCAAGTTGA 1416 0.4922 MTQMAKPLLFLYFLFLFQTLTQSPLATSHPPNPLPIILSVADFGAAGDGLRHDTAAIQSAIDACPTGGPCRVTFPAPGRYLTATVFLKSGVELNVEPGAAVVGGTRLEDFPEDRSRWYVVVAENATDVGIGGGGVVEGQAEKFVVREDPRKNVMVSWNQTGACLGDECRPRLIGFLGCNNVRVSNITLNQPAYWCLHIVRSNDITIQDISIYGDFNIPNNDGIDIEDSNNTIITRCHIDTGDDAICPKSYTGPLYNLTVTNCWIRSKSSAIKFGSASWFDFKYFLFDNITIVDSHRGLAFQIRDGGNVSDIVFSNINISTRYYDPLWWGRAEPIYVTTCPRNSKSKEASISNILFTNITANSENGIFLSGSKGGLLRNLTFIDMNITYRRFTSYAGGLLDYRPGCQELVKHRTAGMVMEHIEGLEVKNVEMRWSNEELEQWNNPLEFKPSTVNNVTFLNFNSGLYTNSKSS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2284 471 Gene3D - 16 396 IPR012334 -
Dod01g2284 471 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 25 464 - -
Dod01g2284 471 SMART pbh1 447 468 IPR006626 -
Dod01g2284 471 SMART pbh1 201 227 IPR006626 -
Dod01g2284 471 SMART pbh1 345 370 IPR006626 -
Dod01g2284 471 SMART pbh1 254 275 IPR006626 -
Dod01g2284 471 SMART pbh1 308 330 IPR006626 -
Dod01g2284 471 SMART pbh1 228 249 IPR006626 -
Dod01g2284 471 SMART pbh1 178 200 IPR006626 -
Dod01g2284 471 PANTHER PECTIN LYASE-RELATED 25 464 - -
Dod01g2284 471 Pfam Glycosyl hydrolases family 28 117 388 IPR000743 GO:0004650|GO:0005975
Dod01g2284 471 SUPERFAMILY Pectin lyase-like 7 392 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2284 Dod-Chr1 60764177 60769098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2284 22 466 Glycoside Hydrolase AT3G57790 66.157 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2284 - - gmx:100794954 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2284 01 60764177 60769098 Dod01g2284 01 60764177 60769098 ECH