Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2257 ATGGCCCTCCATAGACATATTCTCCTCTCAACATTCTTCATCGGCATAATTTCTTTTGTTGCTTGTTATATAACAAGGCAAGAGGACCCACTTGGGAGTATATATGGATCTTGGAAATTCAAGGGCCTGTTCAGGCAAAGCGATGTTCCGAGTGTAAAGAGGTTTGGCGATTTTGATGGCACCTCCCTTTCCCTTAAAATTGTTAATGTCAAAGATTATGGAGCTGGTGGAGGGAATGGTCGTGATGATGACACAGAGGCATTTGAGAAGGCTTGGGAAATAGCTTGTTCTTCGGAGGAAGCGGTTCTTGTGGTGCCTGAAGGAAATTATCTACTCAAACCAATCAAATTCTCTGGCCCTTGCAAATCTGACATCGAAATCCAGATGTATGGAACCCTTGATGCATCAGATGACCCATCAGATTATAGCCAAGACAGCAGACATTGGCTTGTATTTGACGGTGTTAAGAAACTATCAGTTAATGGTGGTGGAATCATCAATGGAAATGGCGACATATGGTGGGAAAACTCATGCAAAAGGAACAAAAAGCTCCCTTGCAAGGATGCTCCTACGGCTTTGACTTTCCACAATTGCCAGAACTTGGTAGTTGAGGACTTGTCTATAATAAATGCACAACAAATGCACGTTTCATTCCAGGACTCCATGAACGTTAAAGCTTCTGGCCTCACAGTTACCGCACCAGGGAATAGCCCTAACACCGATGGGATTCACGTCACCAACAGCCAGAACATCCAAATCTCAAGCTCTGTTATAGGAACTGGTGACGATTGCATATCAATTGTAAGTGGGTCCAAGAATATACTAGCCACAAATATAACATGCGGACCCGGTCATGGTATCAGTATTGGAAGTTTAGGGGCTGGAAAATCCAAAGCATTTGTTTCAGGAATAACAGTGAAGGGAGCCAAGCTTTCTGGAACTACAAACGGAGTTAGAATCAAGACATGGCAGGGAGGCAAAGGACTTGCTAGCGACATCCAGTTTACAAGCATTGAAATGAATAATGTGACCAACCCCATAATAATAGACCAGAATTATTGTGACCAGCCGAAGAAGCCATGCAAAAAACAGAAATCGGCGGTTCAGATTTCGAAGGTGTTGTACCAAGACATATCAGGGACAAGTGCTTCTGATGTGGCTGTGAAGTTTAATTGTAGTGACAGCTTCCCATGCCAGGACATAGAGTTGGAGGACATAGACCTGCAAGGTGAAGGAGGAAAAGAATGTGGAGGCTTTATGCAACAATCGTTAAATTGTCTTATTTTGGAAACGTTAGCCCTAGCTGCTGCTAGCTAG 1317 0.4351 MALHRHILLSTFFIGIISFVACYITRQEDPLGSIYGSWKFKGLFRQSDVPSVKRFGDFDGTSLSLKIVNVKDYGAGGGNGRDDDTEAFEKAWEIACSSEEAVLVVPEGNYLLKPIKFSGPCKSDIEIQMYGTLDASDDPSDYSQDSRHWLVFDGVKKLSVNGGGIINGNGDIWWENSCKRNKKLPCKDAPTALTFHNCQNLVVEDLSIINAQQMHVSFQDSMNVKASGLTVTAPGNSPNTDGIHVTNSQNIQISSSVIGTGDDCISIVSGSKNILATNITCGPGHGISIGSLGAGKSKAFVSGITVKGAKLSGTTNGVRIKTWQGGKGLASDIQFTSIEMNNVTNPIIIDQNYCDQPKKPCKKQKSAVQISKVLYQDISGTSASDVAVKFNCSDSFPCQDIELEDIDLQGEGGKECGGFMQQSLNCLILETLALAAAS* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2257 438 PANTHER - 9 417 - -
Dod01g2257 438 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Dod01g2257 438 SUPERFAMILY Pectin lyase-like 65 414 IPR011050 -
Dod01g2257 438 Pfam Glycosyl hydrolases family 28 101 414 IPR000743 GO:0004650|GO:0005975
Dod01g2257 438 SMART pbh1 221 247 IPR006626 -
Dod01g2257 438 SMART pbh1 248 269 IPR006626 -
Dod01g2257 438 SMART pbh1 270 291 IPR006626 -
Dod01g2257 438 SMART pbh1 301 322 IPR006626 -
Dod01g2257 438 SMART pbh1 330 351 IPR006626 -
Dod01g2257 438 ProSitePatterns Polygalacturonase active site. 278 291 IPR000743 GO:0004650|GO:0005975
Dod01g2257 438 PANTHER ENDO POLYGALACTURONASE 9 417 - -
Dod01g2257 438 Gene3D - 61 429 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2257 Dod-Chr1 60339861 60343568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2257 8 410 Glycoside Hydrolase AT2G41850 53.659 3.73e-143 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2257 K01184 - gmx:100797601 553.903