Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2240 ATGACAGACAATGGAGTTGGGCCTGATCTTGTTACTCACAATATTGTGTTATCCGCATTTAAAAGTGGAGCTCAGTATTCAAAAGCTCTGTCTTATTTTGAACTAATGAAGGGAACTCACATTCATCCTAACACAACTACCCTTAACATTGTTATCCATTGTCTAGTGAAGCTTCAACGGTATGACAAAGCCATGGATATTTTCAATTCCATGAGGGAAAAGAGGTCAGAATGTCACGCTGATGTTGTAACATTCACTAGCATTATACACTTGTATTCTATGTGTGGGCAAGTTGAAAATTGTGTGGCTGCATTCAATATGATGCTTGCAGAAGGGTTAAAACCCAACATAGTCTCATATAATTCACTAATAGGTGCATATGCTGCTCAGGGGATGGACAGTGAGGCTCTTTTGGTTTTCAATGAGATAAAACAAAATGGTTTCCGGCCGGATATTGTATCTCATACATCGCTGCTTAATGCTTATGGAAGATCACAAAAGCCTCGAAAAGCAAGGGAAGTATTTGAGATGATAAAGAGCAACAACTTGAAGCCAAATATTGTCACTTACAATGCACTGATTGATGCCTATGGATCTAATGGTCGGTTGGCTGAGGCAATTGAAATCTTGCGTGAGATGGAACAAGATGGAATTTATCCAAATGTTGTCTCAATATGCACCCTCTTGGCTGCCTGTGGACGGTGTAGTCAGAAGGTGAAGATTGAAACAGTCCTATCAGCAGCTGAGATGCGAGGCATTAAATTGAATACAGCTGCATATAATTCAGCTATAGGAAGCTATATGAATGTGGGGCAATATGATAAAGCTATAGGCTTGTATAAATCTATGAGGAAGAAAAAAATAAAACCTGATTCTGTTACTTACACTGTGTTGATAAGTGGTTGTTGTAAGATGTCAAAATATAGTGAAGCCCTAGCTTTTATGGAGGAAATGACGCACCTAAAACTTCCTTTGTCCAAAGAAGTCTACTCATCTGCCATATGTGCCTATAGCAAACAGGGACAAATCATAGAAGCAGAATCTACATTCAACATGATGAAATCATCTGGCTGCTACCCTGACGTGGTTGCATATACTGCAATGCTTGATGCATATAATGCAGCTGAGAATTGGGAAAAAGCATATGCACTCCTTGAAGAAATGGAAGTACATGACATCAAGCTAGATACTATTGCATGTGCAGCCCTGATGAGAGCTTTTAATAAAGGTGGCCAACCAGGAAGAGTCCTTAGTCTGGCAGAAAGTATGAGAGAAAAAGAGATTCCTTTTAGTGATACCATTTTTTTTGAAATGGTATCTGCCTGTAGCTTATTACATGATTGGAGGACAGCTGTTGATATCATCAAGTACATGGAGCCCTCACTTCCTGTAATTTCATCTGGATGCTTGAATCTTTTCCTGCATTCTTTAGGAAGAAGTGGAAAGACTGAAACCATGTTGAAGTTATTCTACAAAATGTTGGCGTCAGGTGCTGATGTTAACCTCAATACTTATTCTATTCTATTGAAAAACCTCTTATCCTCTGGAAATTGGAGGAAATATTTAGAGGTACTGCAATGGATGGAGGATGAAGGAATTCATCCATCTGATGAAATGTACGATGATATATCCTCCTATTCGCAAAGATGTTGTGGGGCTGAAAATGCTGCAGTCATAAAAGAAAGACTTGAATCCTTGAAAAGAAAATCCGGGGATAAAATTTCTGCAAGCCAACCGTATGAGTCCACTGTACTTGCCTGA 1761 0.3913 MTDNGVGPDLVTHNIVLSAFKSGAQYSKALSYFELMKGTHIHPNTTTLNIVIHCLVKLQRYDKAMDIFNSMREKRSECHADVVTFTSIIHLYSMCGQVENCVAAFNMMLAEGLKPNIVSYNSLIGAYAAQGMDSEALLVFNEIKQNGFRPDIVSHTSLLNAYGRSQKPRKAREVFEMIKSNNLKPNIVTYNALIDAYGSNGRLAEAIEILREMEQDGIYPNVVSICTLLAACGRCSQKVKIETVLSAAEMRGIKLNTAAYNSAIGSYMNVGQYDKAIGLYKSMRKKKIKPDSVTYTVLISGCCKMSKYSEALAFMEEMTHLKLPLSKEVYSSAICAYSKQGQIIEAESTFNMMKSSGCYPDVVAYTAMLDAYNAAENWEKAYALLEEMEVHDIKLDTIACAALMRAFNKGGQPGRVLSLAESMREKEIPFSDTIFFEMVSACSLLHDWRTAVDIIKYMEPSLPVISSGCLNLFLHSLGRSGKTETMLKLFYKMLASGADVNLNTYSILLKNLLSSGNWRKYLEVLQWMEDEGIHPSDEMYDDISSYSQRCCGAENAAVIKERLESLKRKSGDKISASQPYESTVLA* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2240 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Dod01g2240 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Dod01g2240 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Dod01g2240 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Dod01g2240 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Dod01g2240 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Dod01g2240 586 Gene3D Tetratricopeptide repeat domain 409 581 IPR011990 GO:0005515
Dod01g2240 586 TIGRFAM PPR: pentatricopeptide repeat domain 118 152 IPR002885 -
Dod01g2240 586 TIGRFAM PPR: pentatricopeptide repeat domain 188 222 IPR002885 -
Dod01g2240 586 TIGRFAM PPR: pentatricopeptide repeat domain 11 45 IPR002885 -
Dod01g2240 586 TIGRFAM PPR: pentatricopeptide repeat domain 259 292 IPR002885 -
Dod01g2240 586 TIGRFAM PPR: pentatricopeptide repeat domain 363 397 IPR002885 -
Dod01g2240 586 TIGRFAM PPR: pentatricopeptide repeat domain 293 320 IPR002885 -
Dod01g2240 586 TIGRFAM PPR: pentatricopeptide repeat domain 471 497 IPR002885 -
Dod01g2240 586 TIGRFAM PPR: pentatricopeptide repeat domain 329 362 IPR002885 -
Dod01g2240 586 TIGRFAM PPR: pentatricopeptide repeat domain 153 187 IPR002885 -
Dod01g2240 586 TIGRFAM PPR: pentatricopeptide repeat domain 83 117 IPR002885 -
Dod01g2240 586 TIGRFAM PPR: pentatricopeptide repeat domain 504 536 IPR002885 -
Dod01g2240 586 TIGRFAM PPR: pentatricopeptide repeat domain 47 75 IPR002885 -
Dod01g2240 586 PANTHER OS07G0213300 PROTEIN 1 544 - -
Dod01g2240 586 Pfam Pentatricopeptide repeat domain 489 536 IPR002885 -
Dod01g2240 586 Pfam Pentatricopeptide repeat domain 139 200 IPR002885 -
Dod01g2240 586 Pfam Pentatricopeptide repeat domain 1 56 IPR002885 -
Dod01g2240 586 Pfam Pentatricopeptide repeat domain 384 428 IPR002885 -
Dod01g2240 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Dod01g2240 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Dod01g2240 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Dod01g2240 586 Gene3D Tetratricopeptide repeat domain 145 215 IPR011990 GO:0005515
Dod01g2240 586 Gene3D Tetratricopeptide repeat domain 216 322 IPR011990 GO:0005515
Dod01g2240 586 Gene3D Tetratricopeptide repeat domain 75 144 IPR011990 GO:0005515
Dod01g2240 586 Gene3D Tetratricopeptide repeat domain 323 394 IPR011990 GO:0005515
Dod01g2240 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Dod01g2240 586 Pfam PPR repeat family 329 372 IPR002885 -
Dod01g2240 586 Pfam PPR repeat family 256 304 IPR002885 -
Dod01g2240 586 Pfam PPR repeat family 81 127 IPR002885 -
Dod01g2240 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Dod01g2240 586 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 1 544 - -
Dod01g2240 586 Gene3D Tetratricopeptide repeat domain 1 74 IPR011990 GO:0005515
Dod01g2240 586 SUPERFAMILY TPR-like 44 388 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2240 44 545 Glycosyltransferase AT1G05670 25.969 6.86e-42 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2240 - - ahf:112696020 1035.02