Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2166 ATGGCGCTTCTTCTCCACCTGGGTCTTCGCCATCCTCTCCCTCTTCGCTTCATGGCCTCTCGCTCCTTCGCCGCCTCTTCCCTTCACCTCCAACTCCATTCTCTCTCTTCTTCTTCTTCTTCTGCCTCTTTCTCTCTTTCTACTCCCTCCCCTCTCTTTAAACCCAGGGTGGGTTTTCAGCTGAGAAAGTTGTCTAGTCCCTGTTTGGTGCCATATGCTGTCACTCCAAGGGCCTATATGTCATCCCTCCCAGCAACTGAAGCTTTTCAGAAAAGTGAAAGCTCCAAAGCTTATGGTTCTGATCAAATTCAGGTTCTTGAAGGTTTGGACCCTGTTAGGAAAAGGCCCGGAATGTATATCGGAAGCACAGGCCCGCGCGGTTTGCACCATTTGGTGTATGAAATTTTGGATAATGCTGTTGATGAAGCTCAAGCTGGATTTGCTTCCAAGATTGATGTTGTTTTACTAGCAGATGGTTCTGTGAGCATAACTGACAATGGTCGTGGGATTCCTACCGACTTTCATCCAGTTACAAAAAAGTCTTCTTTGGAGACAGTTTTGACGGTCTTGCATGCTGGTGGAAAATTTGGTGGGGCCAACAGTGGATACTCTGTATCAGGAGGTTTACATGGTGTTGGTTTATCTGTTGTTAATGCGTTGTCTGAGGCACTAGAGGTAACAGTTTGGCGTGATGGGTGTGAATACAAGCAAACGTATTCTCGTGGTAAGCCAGTGACAATTCTGACAGGCCTTGTGCTTCCAGATGAAAAGAAAGATCTTCATGGGACAAGTATCAGATTTTGGCCTGACAAAGAAGTATTCACCACTGCTATTCAGTTTGAGTACAACACAATAGCTGGACGCATTAGGGAGTTGGCATTCCTCAACCCAAAGCTTACTATCACACTTCGGAAAGAAGACGATGATCCAGAGAAGATTCAATATAATAAATATTTCTATGCTGGGGGATTGGTTGAATATGTTAAATGGCTTAACACTGACAAGAAAGCTCTTCATGATGCTCTGAGTTTTAGCAAAGAAATAGAAGGAATCAGTATTGATATAGCTTTTCAATGGTGTGAAGATGCATATTCAGACACAATACTGGGATATGCTAATAGTATACGCACTATTGATGGTGGCACCCATATCGATGGCATGAAGGCTTCTTTGACCAGAACACTTAATAGTCTTGGAAAGAAGTCAAAAGTTATCAAGGAAAAGGATATTACTTTAAGTGGTGAGCATGTGAGAGAGGGTCTAACATGTGTTGTTTCAGTCAAGGTCCCAAATCCAGAGTTTGAAGGACAGACAAAGACAAGGTTGGGAAATCCAGAGGTGCGAAAAGTGGTTGATCAATCTATTCAAGAGTATCTTACTGAGTATCTTGAGTTGCATCAAGATGTTCTAGATTCAATACTTTCTAAAGCACTTAATGCTTTCAAGGCAGCTCTAGCCGCAAAAAGAGCAAGAGAATTGGTGAGACAAAAGAGTGTGTTGAGATCTTCATCTCTTCCGGGAAAACTAGCTGATTGTTCATCCACAAATCCTGAAGAATGTGAAATCTTCATAGTTGAAGGTGATTCAGCTGGAGGAAGTGCTAAGCAAGGGCGTGACAGGCGTTTCCAAGCCATTCTTCCTCTGAGGGGTAAGATTCTGAATATTGAAAGGAGGGATGAAGCAGCGATGTACAAAAATGAAGAGATCCAAAACCTAATTCTTGGTCTTGGCCTCGGAGTGAAGGGAGAAGATTTTAAAAAGGATGCACTCCGATATCATAAGATTATTATCTTGACTGATGCTGATGTAGATGGTGCCCACATCCGAACTCTCCTATTAACATTTTTCTTTAGGTATCAGAGAGCTTTGTTTGATGAAGGGTTCATATATGTTGGTGTCCCTCCACTATACAAGGTTGTACGCGGAAAACAAATACACTATTGCTATGACGATGCGGACCTTAAAAAACTTAAAAGATCATTTGCTCCTAATGCATCATACAACATTCAAAGGTTCAAAGGGCTGGGAGAGATGATGCCTTTACAACTATGGGAGACAACCATGGATCCAGAACGCAGATTGTTGAAGCAATTAACGGTTGAGGATGCAGCTGAAGCAAATATTGTTTTTTCCTCTCTGATGGGTACTCGGGTGGATGTCCGGAAGGAGCTGATAAGAAATTCAGCAAACATGATTGATGTTGATCAGCTAGATATTTGA 2220 0.4243 MALLLHLGLRHPLPLRFMASRSFAASSLHLQLHSLSSSSSSASFSLSTPSPLFKPRVGFQLRKLSSPCLVPYAVTPRAYMSSLPATEAFQKSESSKAYGSDQIQVLEGLDPVRKRPGMYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLLADGSVSITDNGRGIPTDFHPVTKKSSLETVLTVLHAGGKFGGANSGYSVSGGLHGVGLSVVNALSEALEVTVWRDGCEYKQTYSRGKPVTILTGLVLPDEKKDLHGTSIRFWPDKEVFTTAIQFEYNTIAGRIRELAFLNPKLTITLRKEDDDPEKIQYNKYFYAGGLVEYVKWLNTDKKALHDALSFSKEIEGISIDIAFQWCEDAYSDTILGYANSIRTIDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHQDVLDSILSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSTNPEECEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGFIYVGVPPLYKVVRGKQIHYCYDDADLKKLKRSFAPNASYNIQRFKGLGEMMPLQLWETTMDPERRLLKQLTVEDAAEANIVFSSLMGTRVDVRKELIRNSANMIDVDQLDI* 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2166 739 ProSitePatterns DNA topoisomerase II signature. 524 532 IPR018522 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Dod01g2166 739 SMART topII5 127 730 IPR001241 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Dod01g2166 739 PANTHER DNA GYRASE SUBUNIT B 40 739 - -
Dod01g2166 739 SMART HKATPase_4 123 273 IPR003594 -
Dod01g2166 739 PRINTS DNA topoisomerase II family signature 127 142 - -
Dod01g2166 739 PRINTS DNA topoisomerase II family signature 162 175 - -
Dod01g2166 739 PRINTS DNA topoisomerase II family signature 370 383 - -
Dod01g2166 739 PRINTS DNA topoisomerase II family signature 207 221 - -
Dod01g2166 739 PRINTS DNA topoisomerase II family signature 589 605 - -
Dod01g2166 739 PRINTS DNA topoisomerase II family signature 607 624 - -
Dod01g2166 739 PRINTS DNA topoisomerase II family signature 669 685 - -
Dod01g2166 739 PRINTS DNA topoisomerase II family signature 522 536 - -
Dod01g2166 739 PRINTS DNA topoisomerase II family signature 627 639 - -
Dod01g2166 739 SUPERFAMILY Type II DNA topoisomerase 497 730 IPR013760 GO:0003918|GO:0005524
Dod01g2166 739 ProSiteProfiles Toprim domain profile. 520 635 IPR006171 -
Dod01g2166 739 Gene3D - 94 321 IPR036890 -
Dod01g2166 739 Gene3D - 322 500 IPR014721 -
Dod01g2166 739 PRINTS DNA gyrase subunit B signature 279 294 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Dod01g2166 739 PRINTS DNA gyrase subunit B signature 476 496 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Dod01g2166 739 PRINTS DNA gyrase subunit B signature 98 108 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Dod01g2166 739 PRINTS DNA gyrase subunit B signature 706 722 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Dod01g2166 739 PRINTS DNA gyrase subunit B signature 572 581 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Dod01g2166 739 PRINTS DNA gyrase subunit B signature 690 702 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Dod01g2166 739 PRINTS DNA gyrase subunit B signature 414 430 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Dod01g2166 739 PRINTS DNA gyrase subunit B signature 294 307 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Dod01g2166 739 PRINTS DNA gyrase subunit B signature 322 344 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Dod01g2166 739 CDD TopoII_Trans_DNA_gyrase 322 476 - -
Dod01g2166 739 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 98 311 IPR036890 -
Dod01g2166 739 CDD HATPase_GyrB-like 128 312 - -
Dod01g2166 739 SUPERFAMILY Ribosomal protein S5 domain 2-like 323 493 IPR020568 -
Dod01g2166 739 Pfam DNA gyrase B 323 492 IPR013506 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Dod01g2166 739 TIGRFAM gyrB: DNA gyrase, B subunit 98 739 IPR011557 GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265
Dod01g2166 739 CDD TOPRIM_TopoIIA_GyrB 520 634 IPR034160 -
Dod01g2166 739 Pfam Toprim domain 521 622 IPR006171 -
Dod01g2166 739 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 125 272 IPR003594 -
Dod01g2166 739 Pfam DNA gyrase B subunit, carboxyl terminus 665 725 IPR002288 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Dod01g2166 739 Gene3D - 501 739 IPR013759 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Dod01g2166 739 PANTHER DNA GYRASE/TOPOISOMERASE SUBUNIT B 40 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2166 Dod-Chr1 58554043 58565697 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2166 K02470 - gmx:100807172 1216.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2166 01 58554043 58565697 Dod01g2166 01 58554043 58565697 ECH