Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2163 ATGTTTGATAGAAATGGGGATGGAAGGATCACAAAGAAGGAGCTAAGTGACTCCCTAAGGAGCCTTGGAATATGCATAACGGAGCAAGATTTGGTCCAAATGATTGAGAAAATAGACGTGAATGGAGATGGGTATGTTGACATTGACGAGTTTGGAGGGTTGTACCAAACCATAATAGAAGATGACAAGAAAGATGAGGAGGAGGACATGAGGGAGGCATTCAATGTGTTTGATCAAAATGGGGATGGTTTCATAACTGGGGAGGAGCTTAGTGCGGTTTTGTCCTCTTTGGGGCTAAGGCATGGCAAGACCATAGAGGATTGCAAGAACATGATCAAGAAAGTGGATGTGGATGGTGATGGCATGGTTGATTTCAAGGAGTTTAAGCAAATGATGAAGGCTGGTGGCTTTGCTGACGCTTCATTAAGTTGA 432 0.4352 MFDRNGDGRITKKELSDSLRSLGICITEQDLVQMIEKIDVNGDGYVDIDEFGGLYQTIIEDDKKDEEEDMREAFNVFDQNGDGFITGEELSAVLSSLGLRHGKTIEDCKNMIKKVDVDGDGMVDFKEFKQMMKAGGFADASLS* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2163 143 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 142 - -
Dod01g2163 143 ProSitePatterns EF-hand calcium-binding domain. 116 128 IPR018247 -
Dod01g2163 143 ProSiteProfiles EF-hand calcium-binding domain profile. 103 138 IPR002048 GO:0005509
Dod01g2163 143 ProSiteProfiles EF-hand calcium-binding domain profile. 26 61 IPR002048 GO:0005509
Dod01g2163 143 Gene3D - 58 138 - -
Dod01g2163 143 SUPERFAMILY EF-hand 1 132 IPR011992 -
Dod01g2163 143 CDD EFh 71 133 IPR002048 GO:0005509
Dod01g2163 143 Pfam EF-hand domain pair 1 55 IPR002048 GO:0005509
Dod01g2163 143 Pfam EF-hand domain pair 67 133 IPR002048 GO:0005509
Dod01g2163 143 ProSitePatterns EF-hand calcium-binding domain. 78 90 IPR018247 -
Dod01g2163 143 ProSitePatterns EF-hand calcium-binding domain. 39 51 IPR018247 -
Dod01g2163 143 Gene3D - 1 57 - -
Dod01g2163 143 ProSiteProfiles EF-hand calcium-binding domain profile. 1 25 IPR002048 GO:0005509
Dod01g2163 143 CDD EFh 1 51 IPR002048 GO:0005509
Dod01g2163 143 ProSitePatterns EF-hand calcium-binding domain. 3 15 IPR018247 -
Dod01g2163 143 SMART efh_1 69 97 IPR002048 GO:0005509
Dod01g2163 143 SMART efh_1 107 135 IPR002048 GO:0005509
Dod01g2163 143 SMART efh_1 30 58 IPR002048 GO:0005509
Dod01g2163 143 SMART efh_1 1 22 IPR002048 GO:0005509
Dod01g2163 143 ProSiteProfiles EF-hand calcium-binding domain profile. 65 100 IPR002048 GO:0005509
Dod01g2163 143 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2163 Dod-Chr1 58533607 58534038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2163 1 138 EF-hand Containing Proteins AT3G07490 78.986 8.49e-66 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2163 K13448 - gmx:100806637 237.654