Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2110 ATGGCCAAGGGCGTGGTGGTCTCCGACGACGAAGATGAGGTCGAGTACGAGGAAGACGAGAGGGAACACGCTGGTGGTGATGGAATGGAAGAGGGTCGCGATGCGGACGAAGACGATGAGGAAGAAGAAGAGGATGGGCAGGATGAATATGAAAACGATGGATTTATAGTGGATGATGTTGAGGATGAAGAGGAGCAGGATGAAGAGAGAGCAGAAAGTGACGATGAGCGACAGAAGAAGAAAAAGAGGAAGAAAAAGGAGGAGTATGTCCTTGATGAAGATGATTATGAGCTGTTGGAGGACAATAATATCAATATTCATCGTCGGAAGGACAGCAAAAAGTTCAAGCGGCTGAAGAAGGGCCAGAGGGACACTGAGGAGGAGCCCTCTGGGCTATCTGATGAGGAGGAGTTTGTTGGGAGTGGTAAAGTTGGGCGGACTGCTGAGGAGAAGCTTAAACGCAGTTTATTTGGTGATGATGAAGGAGCTCCGCTTGAAGACATTGCTGAAGAGGAGGAGCAAGGAGAGGAGGAGGAGGAGGATGCAGACATTGGAGAAGATGATGAAATGGCCGACTTCATTGTGGATGAAGAAGAAGTTGATGAGCATGGAGCTCCTATGAAACGAAGGAAGCTGAAGAGAAAGAAGGCTAGGCAGGCACCAGGTGTCTCTTCCTCAGCTTTACAAGAAGCTCAAGAATTATTTGGTGATGTCGATGAGTTGCTGCGTAATCGCGAAAAAACTAAAGGATTACATGATTACAGAGAGACTAGACTCGAAGAGCAATTTGAGCCTATTGTTCTTTCTGAGAAGTATATGACAGAGAAAGATGACCAAATACGAGAGTTAGATATTCCAGAGAGAATGCAGATAGCAGAGGAGAGTACTGGTGCTCCGCCATTGGATGGAGGTAGTATAGAAGAAGAGAGCCAGTGGATAGTTAGTCAACTTGGAAATGGAGCAGTCCCTTGGATTTCCAAGAAAACAGCAAGCACCCAGAATGGGACAAAGGAACTACCAATTGAGAAGGATGATATTATCAGATTTTTGGAAATGCATCATGTGCAAAAATTAGATATTCCTTTTATTGCTAGGTATAGGAAGGAGGAGTGCTTAAGCCTATTAAAAGACCTAGAGCGATCTGAAGCTGGCGATGAGAATTGGGACAAGAATAACAAGACACCTACTCTAAAATGGCACAAGGTACTCTGGGCTCTACAGGACTTGGACAGGAAGTGGTTGCTTCTTCAGAAGCGGAAGAGTGCCCTTCAATCATACTATAGTAAACGGTTTGAAGAAGAGTCTCCCCGTGTGTATGATGAAACAAGACTAAACTTGAATCGGCAATTGTTTGAATCAGTCATGAGATCACTGAAGGAGGCAGAATCTGAGAGGGAAATTGACGATGTTGACTCAAAGTTCAACTTGCATTTTCCACCAGGTGAAGCTAGTGTTGATGAAGGCCAATACAAGAGACCAAAAAGGAAGTCAATGTATAGCACTTTCAGTAAGGCAGGTCTGTGGGAGGTAGCTAACAGGTTTGGGTGCAGTGCTGAGCAACTTGGGTTATGTCTATCCCTAGTAGCTCTGCATGAGTTGGAGGATCCAAAGGAAACACCAGAGGAGATGGCATCAAACTTTACATGTGCCATGTATGATACCCCTCAAGAAGTACTTAAATGTGCTAGGCACATGGCAGCTGTTGAGATAAGTTGTGAGCCTAGCATTAGGAAACATGTTCGTACCCACTTTCTTGATCATGCTGTGGTGTCAACTTGTCCTACTGCTGATGGAAATACAACAATAGATTCTTTCCATCAGTTTGCGGGGGTAAAGTGGCTTCGGGAGAAGCCTTTATCCAGATTTGAGGATGCACAGTGGCTTCTTGTACAGAAGGCAGAAGAGGAGAAACTGCTTCAAGTTACTATTAAGCTGCCTGAAGAGTATCTTAATAAGTTAATAGACCAATTTAATGAGTATTACATTAGTGACAGTGTTAGCAGATCTGCTCAACTGTGGAATGAACAGAGGAAGTTGATACTGAATGATGCAATTTTTCGATTTCTCTTACCATCAATGGAAAAGGAGGCAAGAGGTGTTTTGGCAAGCAAGGCAAAGAATTGGTTACTTATGGAGTATGGGAAGGCATTGTGGAATAAGGTTTCTGTGGGGCCTTATCAACAGAAGGAAAATGATCTTGGCTCTGATGATGAGGCTGCTCCTAGGGTTATGGCCTGCTGCTGGGGCCCTGGCAAGCCACAAACAACTTTTGTTATGTTAGATTCATCTGGAGAAGTGCTAGATGTGCTTTACACTGGGTCCCTTACTTTAAGATCACAGAATGTTAATGACCAACAGCGGAAGAAGAATGACCAGGAGCGAGTGCTGAAGTTCATGACAGATCACCAACCACATGTTGTTGTTTTAGGAGCTGTAAATTTGTCTTGCACTCGTTTGAAGGAAGATATATATGAGGTCATTTTTAAGATGGTGGAGGAAAACCCTCGAGATGTTGGGCATGAAATGGATGGGCTCAGCATTGTATATGGAGATGAATCTCTTCCCCGTCTTTATGAAAATTCTCGAATTTCCTCTGAACAACTTCCTTCGCAGCAAGGTATAGTGAGGCGGGCTGTTGCTCTTGGTCGATATCTCCAGAATCCATTGGCAATGGTCGCGACATTATGTGGACCTAAACGGGAAATATTGTCATGGAAACTCAGCTCTTTAGAGAGCTTTCTCAACCCAGATGATAAATTTGCTATGGTTGAGCAAGTCATGGTAGATGTGACCAATCAGGTTGGCTTAGACATTAATTTAGCGATAAGTCATGAGTGGTTATTTGCTCCCTTACAGTTTGTTTCTGGGCTTGGTCCACGAAAGGCTGCATCCTTACAGAGATCCTTGGTGAGAGCTGGTGCAATTTTTACTCGGAAGGACTTTCTGACGGAACATAAACTGGGTAAGAAGGTGTTTGTCAACGCAGTTGGATTTTTGCGTGTCCGACGAAGTGGATTGGCTGCTAGCAGCAGCCAGTTTATTGATTTGCTAGATGATACAAGAATTCATCCAGAATCATATATTCTTGCACAAGAGTTGGCTAAAGATGTGTATGATGAGGATGGCACAGGTGATGCAAATGATGATGATGACGCACTAGAGATGGCCATCGAGCATGTGAGGGACCGACCCAGCTATCTGAAAAACCTAGATGTTGAGGAATATGCTTCTGGGAAAAATCGGCAGAACAAAATAGAAACTTTCTATGACATAAAAAGAGAATTGATTCACGGTTTCCAGGATTGGCGCAAGCAATATGAAGAGCCTAGTCAGGATGAGGAGTTCTATATGATTTCAGGTGAGACTGAGGAGACTCTTGCTGAAGGTAAAATTGTCCAAGCCACAGTTCGCAGAGTGCAAGCCCAGAAAGCAATATGTGGCCTTGAATCTGGAATGACTGGAATCCTTATGAAAGAGGACTATACGGATGACTGGAGAGATGTAATTGAACTATCTGATAGGCTCCATGAAGGCGACATACTGACTTGTAAAATCAAGTCAATTCAAAAGAATAGGTATCAAGTCTTTCTTGTTTGTAGAGATAGTGAAATGAGAAGCAATCGGTTTCAGAGTAACCGTGATCTTGATCCTTATTACCACGAAGACCGAAGCTCTCTGCAGAGCGATCAAGATAAAGCTCGGAAAGAAAAGGAGCTTGCAAAGAAGCATTTTAAGCCAAGGATGATTGTTCATCCACGCTTTCAGAACATAACTGCAGATGAAGCAATGGAGTTCTTGTCCGACAAAGACCCTGGAGAAAGTATTATCCGTCCTAGTTCACGTGGACCTTCGTATCTTACTTTAACTCTTAAAATTCATGATGGAGTGTATGCCCACAAGGATATTGTTGAAGGTGGAAAGGAACACAAGGACATCACTAGCTTACTTCGAATTGGGAAGACACTCAAAATTGGTGAGGACACTTTTGAAGATTTAGATGAGGTTATGGACCGTTACGTCGATCCCTTGGTGGCTCACTTAAAGGCAATGTTAAACTATCGTAAGTTCAAGAAGGGTACAAAATCAGAAGTTGATGAACTTTTGAGGATGGAGAAAGCTGAGTATCCTATGCGCATAGTTTATAGCTTTGGCATCTCCCATGAACATCCCGGCACATTTATATTGACATATATAAGAAGTACGAATCCACATCATGAGTACATTGGACTTTATCCAAAAGGATTCAGGTTCCGGAAGAAGATGTTTGAGGATATTGATCGGCTTGTGGCATATTTTCAGAGGCATATTGATGATCCCCAGCATGATTCAGCCCCCTCCATTAGATCTGTAGCTGCTATGGTACCTATGCGAAGCCCTGCAGCTGGCGGCTCATCAGGGGGATCTGCAGGTAGTGGCTGGGGTGGTTCCAACAATGAGGGTGGTTGGAGAGGTAACTCCTACGATAGGGATCAATCATCTACTCCTGGTTCCAGGACAGGACGGGGTGATTACAGAAACCATAATAGTGACGAACACCCTAGTGGAGTGCCTCGTCCATACGGTGGTGGACGCGGACGCGGACGTGGACGCGGACGCGGACGAGGTTCTTATGACAACAATAGAGGACACGGCTCCAATAATGAAAGGCAGGACTCAGGTTATGGTGCAAGCAGATGGGGCTCTGCTACAAAGGATGGGGATGATGGCTTAAGCAATTTTCCTGGGGCTAAGGTCCAAAATTCTCCTGGAAGGGAAGCTTTTCCTGGTGGTTGGGGTGGAAGTGGTGGAGGCAGTGGTTGGGGAGGTGGAACTAGTGCCAATGACAACGGTGGCTGGGGACAAGGGAGTGGTGGTGCTGGTCCAGGTGACACCGAACATGGAAGCACTGGCTGGGGATCTGGCTCCAAGAAGGCAGCTAACACTGGATGGTCTGGAAATGCTGGTGGCAGCTCCGGTTGGTGA 4962 0.4486 MAKGVVVSDDEDEVEYEEDEREHAGGDGMEEGRDADEDDEEEEEDGQDEYENDGFIVDDVEDEEEQDEERAESDDERQKKKKRKKKEEYVLDEDDYELLEDNNINIHRRKDSKKFKRLKKGQRDTEEEPSGLSDEEEFVGSGKVGRTAEEKLKRSLFGDDEGAPLEDIAEEEEQGEEEEEDADIGEDDEMADFIVDEEEVDEHGAPMKRRKLKRKKARQAPGVSSSALQEAQELFGDVDELLRNREKTKGLHDYRETRLEEQFEPIVLSEKYMTEKDDQIRELDIPERMQIAEESTGAPPLDGGSIEEESQWIVSQLGNGAVPWISKKTASTQNGTKELPIEKDDIIRFLEMHHVQKLDIPFIARYRKEECLSLLKDLERSEAGDENWDKNNKTPTLKWHKVLWALQDLDRKWLLLQKRKSALQSYYSKRFEEESPRVYDETRLNLNRQLFESVMRSLKEAESEREIDDVDSKFNLHFPPGEASVDEGQYKRPKRKSMYSTFSKAGLWEVANRFGCSAEQLGLCLSLVALHELEDPKETPEEMASNFTCAMYDTPQEVLKCARHMAAVEISCEPSIRKHVRTHFLDHAVVSTCPTADGNTTIDSFHQFAGVKWLREKPLSRFEDAQWLLVQKAEEEKLLQVTIKLPEEYLNKLIDQFNEYYISDSVSRSAQLWNEQRKLILNDAIFRFLLPSMEKEARGVLASKAKNWLLMEYGKALWNKVSVGPYQQKENDLGSDDEAAPRVMACCWGPGKPQTTFVMLDSSGEVLDVLYTGSLTLRSQNVNDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDIYEVIFKMVEENPRDVGHEMDGLSIVYGDESLPRLYENSRISSEQLPSQQGIVRRAVALGRYLQNPLAMVATLCGPKREILSWKLSSLESFLNPDDKFAMVEQVMVDVTNQVGLDINLAISHEWLFAPLQFVSGLGPRKAASLQRSLVRAGAIFTRKDFLTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYILAQELAKDVYDEDGTGDANDDDDALEMAIEHVRDRPSYLKNLDVEEYASGKNRQNKIETFYDIKRELIHGFQDWRKQYEEPSQDEEFYMISGETEETLAEGKIVQATVRRVQAQKAICGLESGMTGILMKEDYTDDWRDVIELSDRLHEGDILTCKIKSIQKNRYQVFLVCRDSEMRSNRFQSNRDLDPYYHEDRSSLQSDQDKARKEKELAKKHFKPRMIVHPRFQNITADEAMEFLSDKDPGESIIRPSSRGPSYLTLTLKIHDGVYAHKDIVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVAHLKAMLNYRKFKKGTKSEVDELLRMEKAEYPMRIVYSFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFRFRKKMFEDIDRLVAYFQRHIDDPQHDSAPSIRSVAAMVPMRSPAAGGSSGGSAGSGWGGSNNEGGWRGNSYDRDQSSTPGSRTGRGDYRNHNSDEHPSGVPRPYGGGRGRGRGRGRGRGSYDNNRGHGSNNERQDSGYGASRWGSATKDGDDGLSNFPGAKVQNSPGREAFPGGWGGSGGGSGWGGGTSANDNGGWGQGSGGAGPGDTEHGSTGWGSGSKKAANTGWSGNAGGSSGW* 1654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2110 1653 Gene3D - 263 1004 - -
Dod01g2110 1653 Gene3D - 731 1121 IPR037027 GO:0006139
Dod01g2110 1653 MobiDBLite consensus disorder prediction 113 228 - -
Dod01g2110 1653 MobiDBLite consensus disorder prediction 1539 1557 - -
Dod01g2110 1653 MobiDBLite consensus disorder prediction 31 71 - -
Dod01g2110 1653 Gene3D - 1010 1102 IPR042066 -
Dod01g2110 1653 SUPERFAMILY SH2 domain 1254 1340 IPR036860 -
Dod01g2110 1653 CDD SH2_Cterm_SPT6_like 1350 1436 IPR035018 -
Dod01g2110 1653 SUPERFAMILY Nucleic acid-binding proteins 1124 1204 IPR012340 -
Dod01g2110 1653 SMART S1_6 1127 1200 IPR022967 -
Dod01g2110 1653 MobiDBLite consensus disorder prediction 163 199 - -
Dod01g2110 1653 CDD SH2_Nterm_SPT6_like 1251 1339 IPR035019 -
Dod01g2110 1653 Gene3D SH2 domain 1349 1445 IPR036860 -
Dod01g2110 1653 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 85 1647 IPR017072 GO:0032968
Dod01g2110 1653 MobiDBLite consensus disorder prediction 1628 1653 - -
Dod01g2110 1653 Pfam Acidic N-terminal SPT6 36 124 IPR028083 -
Dod01g2110 1653 Gene3D - 296 488 IPR023319 -
Dod01g2110 1653 MobiDBLite consensus disorder prediction 139 161 - -
Dod01g2110 1653 Pfam Helix-hairpin-helix motif 900 1001 IPR032706 -
Dod01g2110 1653 SUPERFAMILY Ribonuclease H-like 741 896 IPR012337 -
Dod01g2110 1653 SMART rnase_8s 741 859 IPR006641 GO:0006139
Dod01g2110 1653 MobiDBLite consensus disorder prediction 1469 1502 - -
Dod01g2110 1653 Coils Coil 57 77 - -
Dod01g2110 1653 SUPERFAMILY RuvA domain 2-like 1015 1104 IPR010994 -
Dod01g2110 1653 MobiDBLite consensus disorder prediction 1458 1653 - -
Dod01g2110 1653 Pfam SH2 domain 1218 1435 IPR035420 -
Dod01g2110 1653 Pfam Holliday-junction resolvase-like of SPT6 740 896 IPR028231 -
Dod01g2110 1653 Gene3D SH2 domain 1237 1348 IPR036860 -
Dod01g2110 1653 Gene3D - 1122 1210 IPR012340 -
Dod01g2110 1653 ProSiteProfiles S1 domain profile. 1129 1200 IPR003029 GO:0003676
Dod01g2110 1653 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 85 1647 - -
Dod01g2110 1653 SUPERFAMILY RuvA domain 2-like 912 1002 IPR010994 -
Dod01g2110 1653 Coils Coil 168 188 - -
Dod01g2110 1653 Pfam HHH domain 1016 1103 IPR041692 -
Dod01g2110 1653 MobiDBLite consensus disorder prediction 1210 1235 - -
Dod01g2110 1653 PIRSF Spt6 3 1505 IPR017072 GO:0032968
Dod01g2110 1653 SUPERFAMILY Tex N-terminal region-like 336 720 - -
Dod01g2110 1653 MobiDBLite consensus disorder prediction 72 92 - -
Dod01g2110 1653 Gene3D - 489 934 IPR023323 -
Dod01g2110 1653 MobiDBLite consensus disorder prediction 1 93 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2110 K11292 - gmx:100809136 2749.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2110 01 57625799 57635692 Dod01g2110 01 57625799 57635692 ECH