Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2065 ATGGGTGGCGCCGCCCCAAGGTTCCTGTCGCTTCTGAGCAGCAGCCCCTTCCCTCTCCTCCGCCACCGCCACACCCTCCTCCTCCTCTCTTCCTCCTCCTCATCCTACTTCCACCGCCTCTCCTCTTCCCCTTCCCCTTCCCCTTCCACTCTCAAACTCAAACCCTCCCAACACCAACACCGAAAACGCTTCCAAACCGCAGCTTCTTCCTCTTCTCTCAATTCTGACACAGCATTTTCTTCTTCTTCTTCTTCTTCTGCAGTCCCTCACCCGTGGCCTGAGTGGTCGCGCTTCCTCTCCCACATCTCCTCCGCCGGATACCTCCACCCTCCCCTCCCCCTCCCCGCCGAGTTCCAGGCCTTCTCGCCGCCCGCCGATTTGCCGCCGCAGTTCGTCAGCGATGCTGCTGCCTGCTTCTCCTTCGCCCGCCATAGACCCAATCTTTTGCGGTTGCTTTCGAAGAGAGACGTTGCGGTTGTGGCTGAGCATGGCGCTCCCTTTCTGTTCCGAGATGCTGAGGATTCTGTCTCGAAGATGAAGGCTTTTTTGTCCAACAATGATGCCACTGTGTTGGAGACTGACAGAGCAACTATGGTTGATCTAATGAAGTTTATGTTGAGTTATGCAAGTAGCCCATTGCTCTCATCAGGAAGCAACAATCTCTATAACAGAGATCTTGTTGAATCATCTGTCAGAAATCTATTTGGTGAACTTTTCAAGCTCAGTTACAATGCACCTAGACCTAACTCGTCTGAGTCAGTGCAAAATCAAATGTCTGGTGGATTTGGACAGACAATTCGCCCTAGACAAAAAATTGAAATGAAAAGGGGTGATTGGATTTGCCCAAGCAGGTGTAGTTTCCTGAATTTTTCAAGAAATGCTGAATGTCGCAAATGTGAAGAGGCGAGACCAAAAAGACAACTGACAGGAGGAGAATGGGAGTGTCCTCAGTGTGATTTCTATAATTACGGGGGGAATGTTACTTGCTTAAGGTGTGATTGCAAACGGCCTGGACAAATATCTTTGGGTCCCATGAATACCACATCGAATATCGGGTATGGAAATGGAGACAAAACTAACACTTCAGATGTTGATGGTAGATTAGCTGCTAATGAAGAGAAGGCACAGCGTTGGTTTAGTAAGGTTTCTCAACTAGACAGCAGTGCTGATATCAACAGTCTAATAGCAGATGAAGATTTTCCTGAAATAATGCCATTAAGGAAGGGAGTAAATAGATTTGTTGTGAGCACTAGGAAAACTCCATTGGAGAGGAGGTTGTCCAATGCTCAAAATAGGAGAAACTTGGGCAATAATGGCCCTCCTGGGTCTGAGGATTTTAAAGCTGAAGAGACAACCAGGGCCCATGACACACTGTATGATAATCTAGGTCGTTCAGCTGGTGTTTCTCAATCTGACTATAAGAACATTGCTGCTGAACACAATGCAAGTAGAGATTGCCCAGCTTCAACTGCTAGCAATATGAAAGGGAGCAACTCTAGTACTATTCCTCCTGTTCCATTGTCTGCTGATATGCTTGCCCAAAAGTCTGAGAATGTGATAATGGAGCAGAGCAAAAACGATGTCCGGTATGCTAGTTCTGGTTCAGATGACAATTCACAATTTTCTAATAATTCTACAAGCCAAAATGGCATCACAGACAAGGGAAAAGAGCAAGCTGAAAAATCTGAGAGGTGGTTTAGAAAGGTTGCTGAGCTGCATAACGTTTCAGATTCATCGAGTGCAATATCTGATGAGGACTTCCCTGAAATAATGCCCATGCGCAAAGGAGAAAATCGATTTGTTGTTAGCAAGAAAAAAGATCGTTCATTGACTTCACCTGCATATAAGAGACGCATGGCCATGGAGCAATCTGGCAATAGCAACTTTGTGCCCTTTGTTCCCTTCCCTCCAGATTACTTTGCCAAAAAGGCCAACCAACAGACAGATGGAAAAGATTCAACAGATAGGTGCAATGTTGAATCACCTTCAATATCTGTGATGGCCGAGAAGTCTCCGGAGATGTCAGATGATTCTAGAGCTAGAACTGAGTCCCCAGGTGCAAACTATGCCCAAGGTATGACCAATGCTGAAACATTGTCTGGGGTTCCAGCTAACCCTCCAGAGATGTTAGATGATGCTAGGCTTGGGTGGGAAAGACGAGAAAATGTCAAAGAGATTGGAAATCAATATTTAAGCATGAAGAGCTGGAGTCCAGAACCTTCTGAACAGAGCTCAACTAATAATGTTGTTCATTCTACCCATGTGACAACAGCCAGTGGCAATTCAAGCCAGAGTTTCAATCAAGATGATTCCAGGAACAAGCATTCTAGTAATAGAGTTCATCCCCAGCATCTGGGAGCCAGAATGTCAGAGCACAATGGACAGGAAAGAGTTTGGAGGGGTCCTGCTGTGAAGGAACCGGATCCTTTGGACATGTCAGAGGAGGCGAAGGCGGAGAGGTGGTTCCGCCGTGTTGCGCAGATCAAGGACATCTCTGAGCTCAGTCAGATTCCAGATGAAGATTTCCCCTCAATAATGCCTATGCGCAAAGGGGTGAACAGATTTGTTGTGAGCAGAAGGAAAACACCATTGGAAAGGAGATTGACATCTCAGCAATACCGAAGAAATCTTCCAGTTGTGAGCTCTGATCCTGTCAAAAAAGAAAACGAAGGGCCACAAGCAGGGCATTCTCAGACTCTCAACTTCCGCCTCCTTCTTCATTGCTATCTCCGGGGCCGGTTAGCCTCATGTCGCTTCTTCTTTAGCAACTTCCATGGCCAAGGCCAAACGTTTAGCTTTCGCTGCGCAAGTTCAGGTACCGTCTCTCTCCCCCCCTCTTTTCATCGCACCTCCACTGTGGATCTGCCGTTGCTTCGTCTCGCACCACCGCAATTCAGCCCACACACCATCAATTGGAAACCACGCCGCGCTTGTTGCCAGGAGCCTGCTGCCGCTGCTCTGTTCGTGAAGGTGCCAGAACCGGATCTGATAATTCATCTGAATCCATCTGATTGA 3015 0.4736 MGGAAPRFLSLLSSSPFPLLRHRHTLLLLSSSSSSYFHRLSSSPSPSPSTLKLKPSQHQHRKRFQTAASSSSLNSDTAFSSSSSSSAVPHPWPEWSRFLSHISSAGYLHPPLPLPAEFQAFSPPADLPPQFVSDAAACFSFARHRPNLLRLLSKRDVAVVAEHGAPFLFRDAEDSVSKMKAFLSNNDATVLETDRATMVDLMKFMLSYASSPLLSSGSNNLYNRDLVESSVRNLFGELFKLSYNAPRPNSSESVQNQMSGGFGQTIRPRQKIEMKRGDWICPSRCSFLNFSRNAECRKCEEARPKRQLTGGEWECPQCDFYNYGGNVTCLRCDCKRPGQISLGPMNTTSNIGYGNGDKTNTSDVDGRLAANEEKAQRWFSKVSQLDSSADINSLIADEDFPEIMPLRKGVNRFVVSTRKTPLERRLSNAQNRRNLGNNGPPGSEDFKAEETTRAHDTLYDNLGRSAGVSQSDYKNIAAEHNASRDCPASTASNMKGSNSSTIPPVPLSADMLAQKSENVIMEQSKNDVRYASSGSDDNSQFSNNSTSQNGITDKGKEQAEKSERWFRKVAELHNVSDSSSAISDEDFPEIMPMRKGENRFVVSKKKDRSLTSPAYKRRMAMEQSGNSNFVPFVPFPPDYFAKKANQQTDGKDSTDRCNVESPSISVMAEKSPEMSDDSRARTESPGANYAQGMTNAETLSGVPANPPEMLDDARLGWERRENVKEIGNQYLSMKSWSPEPSEQSSTNNVVHSTHVTTASGNSSQSFNQDDSRNKHSSNRVHPQHLGARMSEHNGQERVWRGPAVKEPDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSRRKTPLERRLTSQQYRRNLPVVSSDPVKKENEGPQAGHSQTLNFRLLLHCYLRGRLASCRFFFSNFHGQGQTFSFRCASSGTVSLPPSFHRTSTVDLPLLRLAPPQFSPHTINWKPRRACCQEPAAAALFVKVPEPDLIIHLNPSD* 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2065 1004 ProSiteProfiles Zinc finger RanBP2 type profile. 309 338 IPR001876 -
Dod01g2065 1004 SUPERFAMILY Ran binding protein zinc finger-like 271 305 IPR036443 -
Dod01g2065 1004 MobiDBLite consensus disorder prediction 485 505 - -
Dod01g2065 1004 ProSiteProfiles Zinc finger RanBP2 type profile. 275 305 IPR001876 -
Dod01g2065 1004 MobiDBLite consensus disorder prediction 641 710 - -
Dod01g2065 1004 ProSitePatterns Zinc finger RanBP2-type signature. 279 299 IPR001876 -
Dod01g2065 1004 MobiDBLite consensus disorder prediction 40 54 - -
Dod01g2065 1004 MobiDBLite consensus disorder prediction 790 810 - -
Dod01g2065 1004 MobiDBLite consensus disorder prediction 421 449 - -
Dod01g2065 1004 Pfam Zn-finger in Ran binding protein and others 311 337 IPR001876 -
Dod01g2065 1004 MobiDBLite consensus disorder prediction 529 560 - -
Dod01g2065 1004 MobiDBLite consensus disorder prediction 756 771 - -
Dod01g2065 1004 ProSitePatterns Zinc finger RanBP2-type signature. 313 332 IPR001876 -
Dod01g2065 1004 MobiDBLite consensus disorder prediction 529 553 - -
Dod01g2065 1004 MobiDBLite consensus disorder prediction 756 810 - -
Dod01g2065 1004 MobiDBLite consensus disorder prediction 480 506 - -
Dod01g2065 1004 PANTHER ZINC FINGER PROTEIN VAR3, CHLOROPLASTIC 3 890 - -
Dod01g2065 1004 PANTHER ZINC FINGER PROTEIN 3 890 - -
Dod01g2065 1004 MobiDBLite consensus disorder prediction 681 701 - -
Dod01g2065 1004 MobiDBLite consensus disorder prediction 421 438 - -
Dod01g2065 1004 MobiDBLite consensus disorder prediction 40 75 - -
Dod01g2065 1004 SMART zf_4 311 335 IPR001876 -
Dod01g2065 1004 SMART zf_4 277 302 IPR001876 -
Dod01g2065 1004 Gene3D - 307 339 - -
Dod01g2065 1004 Gene3D - 267 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2065 Dod-Chr1 56798653 56803726 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2065 90 342 EF-hand Containing Proteins AT1G55040 31.650 2.38e-35 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2065 - - aip:107604755 1051.2