Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2060 ATGAGAATGGCGCTATCATCTTCGTCTTCATGCTGCTATTCTTCTTCTTACTCTTATTCAATGCTTCCTCGTCCCTTCATTTCTGGACTGGGCGGTGGGCATCCTATTATCATTAGCGCCAAGCTGAAAGGCAGTGGCAGTGGCGGTAATTCTCGTCGCAGACTGAAAGCTTCTTCTACGATTGTGGCGCCACTCTTATCCGCCACCACTCGGCACGGCCTCGAAACTGTCAACATTGCTGAAGATGTCACCCAGCTGATTGGAAATACACCAATGGTATACCTCAACAAAGTAACAGAGGGGTGTGTGGCAAATGTTGCTGCAAAACTTGAGTCTATGGAACTATGCAGAAGTGTCAAGGACAGAATTGGCTATAGTATGTTATCTGATGCTGAAGAGGTTGGAGCAATTTCTCCAGGGAAGACTATTTTAGTTGAGCCAACAACTGGAAACACAGGACTAGGCATTGCTTTTGTTGCAGCAATGAAGGGGTACAAACTTATAGTCATCATGCCTGCTTCCATAAATCTTGAGAGGAGAATCCTTTTGCGTGCATTTGGTGCAGAGATTGTTTTGACTGATGCAGAGAAGGGACTGAAAGGGGCAGTTGACAAAGCTGAAGAAATTGTTCACCAAACACCCAATGCTTACATGTTTCGACAGTTTGATAACATGACTAATTCAAAGATCCACTTCGAAACTACAGGGCCAGAGATATGGGAGGATACCGTGGGTAATGTTGATGTATTGGTTGCTGGGATTGGAACTGGTGGCACTGTTACTGGCACTGGACGTTACCTGAAACTGATGAACAAAAACATAGAGGTGGTTGGTGTGGAGCCTGCTGACAGGAGTATAATCTCAGGAGACAATCCAGGTTTCATGCCAAGCATTTTGGATATCAAACTTCTTGATGAGGTTATCAAGGTTACCAATGTTGAAGCTGTTGAAATGGCTAGGAGATTAGCATTGGAAGAAGGTTTGCTGGTTGGAATTTCTTCAGGAGCTGCTGCTGCTGCTGCCATAAGTTATGCAAGACGGCCTGAAAATTCTGGAAAACTTATTGTGGTTATTTTTCCTAGTTTTGGCGAGAGGTATATTTCCACTGCTCTCTTCCATTCTATCTATGAAGAGGTTCAGAAAATGTAA 1149 0.4404 MRMALSSSSSCCYSSSYSYSMLPRPFISGLGGGHPIIISAKLKGSGSGGNSRRRLKASSTIVAPLLSATTRHGLETVNIAEDVTQLIGNTPMVYLNKVTEGCVANVAAKLESMELCRSVKDRIGYSMLSDAEEVGAISPGKTILVEPTTGNTGLGIAFVAAMKGYKLIVIMPASINLERRILLRAFGAEIVLTDAEKGLKGAVDKAEEIVHQTPNAYMFRQFDNMTNSKIHFETTGPEIWEDTVGNVDVLVAGIGTGGTVTGTGRYLKLMNKNIEVVGVEPADRSIISGDNPGFMPSILDIKLLDEVIKVTNVEAVEMARRLALEEGLLVGISSGAAAAAAISYARRPENSGKLIVVIFPSFGERYISTALFHSIYEEVQKM* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2060 382 Gene3D - 85 368 IPR036052 -
Dod01g2060 382 Pfam Pyridoxal-phosphate dependent enzyme 83 360 IPR001926 -
Dod01g2060 382 PANTHER S-SULFO-L-CYSTEINE SYNTHASE (O-ACETYL-L-SERINE-DEPENDENT), CHLOROPLASTIC 63 382 - -
Dod01g2060 382 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 79 376 IPR036052 -
Dod01g2060 382 Gene3D - 121 223 IPR036052 -
Dod01g2060 382 CDD CBS_like 88 368 - -
Dod01g2060 382 PANTHER CYSTATHIONINE BETA-SYNTHASE 63 382 - -
Dod01g2060 382 TIGRFAM cysK: cysteine synthase A 84 372 IPR005859 GO:0004124|GO:0006535
Dod01g2060 382 TIGRFAM cysKM: cysteine synthase 84 372 IPR005856 GO:0004124|GO:0006535
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2060 Dod-Chr1 56744490 56754189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2060 75 382 Miscellaneous Gene Families AT3G03630 79.221 1.66e-167 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2060 K22846 - gmx:100819100 556.599