Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2052 ATGGCCACCGTCTTCCGAACCCCCATTTTTCGGCCACCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCAAAGCCCTCGTGCGTTTCCTTTGCTTCTTTCAGACAAATTGCTAACCGCAAAAGTGGCACTTCTCTGCGGTTCCCTGCAATTCCGTCCCTCCGGTTCGTCAAGTTCGTGCCTTTTGCTTTCGACGGCGACACCGAGGCACCGCCTCAAGTTCAAGAACCGGAGGCTCAGCAACTTCAGGACTCTCCAGATGGTGCTGTTGGTGTAGAGGACAGTGCAGGCGATGAGGTTAGTGATGCTGGTGAAACAACTTCGCCCTTGCTAGAGTTACTGCAATCTTACAAAGAAGCATTAGCTAATAATGAGGAAGCCAAAGTTGCTGAGTTGGAAGCATCATTGAAATCCATTGAAGAGGAGAAAGCGGGTCTTGAAGGGAAAATAGCTTCTTTATCTGAAGAGTTATCAATAGAAAAGGATAGGATTCTAAGGATTAGTGCGGACTTTGACAATTTCCGGAAGAGAACTGAAAGAGATCGCCTCTCACTAGTCACAAATGCTCAGGGTGAAGTTGTGGAGAGTTTGTTGCCTGTATTGGATAATTTTGAGAGAGCGAAAACTCAGATTAAGGTTGAGACAGAAGGAGAGGAGAAAATAAACAACAGCTATCAGAGCATATATAAGCAGTTCATTGAAATTCTAACTTCACTCGGAGTTGAACCCGTGGAGACAGTTGGAAGACCCTTTGATCCATTGCTACACGAAGCAATTATGCGGGAGGATTCTACTGAATTTGAGGATGGCATCATAATCCAAGAATTCCGAAAGGGTTTTAAACTTGGTGATCGTCTGTTACGTCCATCAATGGTGAAGGTATCGGCTGGTCCAGGACCTGCAAAACCTGAACAGGAAGCATTGCACGAAGAGCAAGTCACAGGTGAAAGTTCAGAGGCCAGCAAAGAAAACGAGGGTAGCACTGAAACTCAGTCTGCTTGA 999 0.4715 MATVFRTPIFRPPSSSSSAAAAAKPSCVSFASFRQIANRKSGTSLRFPAIPSLRFVKFVPFAFDGDTEAPPQVQEPEAQQLQDSPDGAVGVEDSAGDEVSDAGETTSPLLELLQSYKEALANNEEAKVAELEASLKSIEEEKAGLEGKIASLSEELSIEKDRILRISADFDNFRKRTERDRLSLVTNAQGEVVESLLPVLDNFERAKTQIKVETEGEEKINNSYQSIYKQFIEILTSLGVEPVETVGRPFDPLLHEAIMREDSTEFEDGIIIQEFRKGFKLGDRLLRPSMVKVSAGPGPAKPEQEALHEEQVTGESSEASKENEGSTETQSA* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2052 332 MobiDBLite consensus disorder prediction 318 332 - -
Dod01g2052 332 Gene3D - 114 237 IPR013805 -
Dod01g2052 332 MobiDBLite consensus disorder prediction 303 317 - -
Dod01g2052 332 Hamap Protein GrpE [grpE]. 82 295 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Dod01g2052 332 MobiDBLite consensus disorder prediction 291 332 - -
Dod01g2052 332 Coils Coil 121 162 - -
Dod01g2052 332 CDD GrpE 160 293 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Dod01g2052 332 PRINTS GrpE protein signature 164 180 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Dod01g2052 332 PRINTS GrpE protein signature 192 207 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Dod01g2052 332 PRINTS GrpE protein signature 247 262 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Dod01g2052 332 PRINTS GrpE protein signature 274 293 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Dod01g2052 332 PANTHER GRPE PROTEIN 17 309 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Dod01g2052 332 MobiDBLite consensus disorder prediction 66 104 - -
Dod01g2052 332 Pfam GrpE 136 294 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Dod01g2052 332 Gene3D Head domain of nucleotide exchange factor GrpE 239 294 IPR009012 GO:0006457
Dod01g2052 332 ProSitePatterns grpE protein signature. 250 293 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Dod01g2052 332 PANTHER GRPE PROTEIN HOMOLOG 17 309 - -
Dod01g2052 332 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 240 296 IPR009012 GO:0006457
Dod01g2052 332 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 144 239 IPR013805 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2052 Dod-Chr1 56632337 56637870 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2052 K03687 - gmx:100820521 479.559