Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2015 ATGTTAGCATGCCCTAGCAGCACCTTCCATGGCGGTGCTGCCACTCTTTACCACCACCACCACCACCACCACCACCACCACCACCGCCACCACCGCCATGCCCAACCTCCTCGCCCCCTCCTCCGCATCGCCGCTCCCGGAAAATGCAGGTCCCGCTCTCTCTCCCTCCTCTTTTCCGCCAACAACCGCAACGGCTTAACCGTCAGAGCTTCCACGGAACCGTCGGAGATTCTTGACGGCGCTGGCGCTCACTTTGCCACGACGCAACCGTATTCCGTGAAGATTCCCGTTGGTGATAGACATATTTTGGTTGAGACTGGTCATATAGGAAGACAAGCAAGTGGTTCCGTTACAGTTACAGATGGAGAGACAATTGTGTATACAACTGTTTGTTTGGATGATGTTCCTAGTGAGCCATCTGATTTTTTTCCTCTTTCTGTGAATTATCAAGAGCGTTTTTCAGCAGCTGGTCGCACTAGCGGAGGGTTTTTCAAACGAGAAGGGAAGACAAAGGATCATGAGGTTCTTATTTGTAGATTGATTGATAGGCCTCTGCGTCCTACTATGCCTAAGGGCTTCTACCATGAAACTCAAATATTGTCTTGGGTTTTAAGTTATGATGGATTGCACTCCCCTGATTCCTTGGCGGTCACTGCAGCTGGCATAGCAGTCGCACTTTCAGAAGTGCCAACGTCAAAAGCAGTTGCTGGAGTTCGAATTGGTCTTGTTGGTGATAGGTATATAGTAAATCCTACAACCAAGGAGATGGAAAAGTCTGAGTTGGACCTTGTGCTGGCTGGCACAGATAGTGCCATATTGATGATTGAGGGGTATAGCAATTTTCTTCCGGACGAGAAGTTACTCAAAGCTGTAGAAGTTGGTCAGGATGCAGTGCAAGCAATCTGTAATGAAGTAGAAGCTTTGGTTAAGCAGTGTGGGAAACCAAAGATGTTTGATGCAATCAAGTTACCTCCTCCTGAGCTTTATAAATATGTTGAAGAAATTGCTGGTGATGAGTTGCTAAAAGTTCTTCAGATTAGAAACAAAATACCAAGAAGGAAAGCTCTTTCTACATTAGAAGAAAGGGTTCTGAAGATACTTACAGAAAGTGGGTTTGTCATTAACGATGCAACATCAAGGAGTAATGCTGAATACATTGCAGAGATTCTTGAGGAGGAGGATGAAGATGAGGAAGTTATTGTTGATGGTGAAATTGATGAGGGTGATGTTCATATAAAGCCAACTCCATGCAAACCAACTCGTTTATTTGCTGAGGTAGATGTGAAGTTGGTTTTTAAAGAAGTTTCATCCAAGTTTTTGAGGAGGCGCATTGTAGAGGGGGGAAGAAGAAGTGATGGGCGAACACCAAACGGAATACGTCCAATCAACTCAAGATGTAGCCTACTACCTAGAGCACATGGAAGTGCTCTTTTTACGAGAGGCGAGACACAGTCACTGGCTGTTGTTACACTCGGAGATAAGCAAATGGCACAAAAAATAGACAATCTTATGGATTTTGATGAATTCAAGAGGTTCTATCTTCAGTATTCATTTCCTCCTTCTTCTGTTGGTGAAGTTGGCCGAATTGGTGCGCCAAGTAGAAGAGAAATTGGCCATGGGATGCTTGCTGAGAGATCCCTTGAACCAATTTTGCCTTTGGAGGATGATTTCCCTTACACTATACGTGTTGAGAGTACTATAACAGAAAGCAATGGCTCATCAAGCATGGCTTCTGTTTGTGGAGGTTGCTTAGCATTGCAAGATGCTGGGGTTCCTATTAAGTGCTCTATTGCTGGAATCGCCATGGGTATGGTACTGGACACTAAGGAATTTGGTGGTGATGGAACTCCACTTATTTTGTCTGACATAACTGGAGCTGAAGATGCATCTGGAGATATGGATTTCAAGGTTGGAGGTATTACTTTGCCCATCATGAGAGAGGCACTCGTACAAGCAAGAGAGGGCAGGAAGCATATTCTCGGTGAAATGATGAATTGCTCACCGCCTCCAGCTAAAAGGCTTTCCAAGCATGCACCTTTGATTCACATAATGAAGGTCAAACCTGAGAGAATAAATCTTATAATTGGTTCTGGTGGAAAAAAAGTGAAGAGCATTATTGAGGAATCTGGAATAGAGGGTATCGATACAGAAGATGATGGCACTGTGAAAATAACTGCAAAAGATTTGTCTAGTTTAGAGAGGTCTAAAGCTATTATTAGTAATTTGACAATGGTTCCAACTATTGGTGATATATATAGGAACTGTGAAATCAAATCAATAGCTCCATATGGAGTTTTTGTAGAGATAGCTCCTGGGCGAGAGGGACTTTGCCATATCAGTGAACTCAGTTCAGGTTGGCTACCCAAGGCAGAAGATGCTTTCAAAGTGGGAGACCATATTGATGTAAAGCTTATAGAGATAAATGATAAGGGACAGCTGCGCCTTAGCCACCGAGCAATGCTTCCTGATACGGATCTAGACAAGTCAAATGCTAATCAGCCTTCTGGCAAACTCACTGAAGATGGTGGAACTTCAGAAAAATCCACTGACAAGAGTTTATTGAAAAAAGTTACCCGCCTGCAGAAAGATGGTTCAGCCGAAGTGAAGATTGAACAGCCTAATGATAAGACTAGCACTCCCAAAGTCACAGTCTCGTCTAAGAGGAGATCAGAGGACAATTCTGTCATTCCATCAAAAAAATTTATCAGGAAATTGGTTAACCCTTCCCAGGATAAGTCCTTAACTAACAAAGACAAGATAAAGAAAAGTAGCGACAATGGAGTTGATAGTGTTCCTGGCAAAGATGAAAATAGTTTGGTTAGTGGAGAGGCATAA 2835 0.4353 MLACPSSTFHGGAATLYHHHHHHHHHHHRHHRHAQPPRPLLRIAAPGKCRSRSLSLLFSANNRNGLTVRASTEPSEILDGAGAHFATTQPYSVKIPVGDRHILVETGHIGRQASGSVTVTDGETIVYTTVCLDDVPSEPSDFFPLSVNYQERFSAAGRTSGGFFKREGKTKDHEVLICRLIDRPLRPTMPKGFYHETQILSWVLSYDGLHSPDSLAVTAAGIAVALSEVPTSKAVAGVRIGLVGDRYIVNPTTKEMEKSELDLVLAGTDSAILMIEGYSNFLPDEKLLKAVEVGQDAVQAICNEVEALVKQCGKPKMFDAIKLPPPELYKYVEEIAGDELLKVLQIRNKIPRRKALSTLEERVLKILTESGFVINDATSRSNAEYIAEILEEEDEDEEVIVDGEIDEGDVHIKPTPCKPTRLFAEVDVKLVFKEVSSKFLRRRIVEGGRRSDGRTPNGIRPINSRCSLLPRAHGSALFTRGETQSLAVVTLGDKQMAQKIDNLMDFDEFKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGMLAERSLEPILPLEDDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGIAMGMVLDTKEFGGDGTPLILSDITGAEDASGDMDFKVGGITLPIMREALVQAREGRKHILGEMMNCSPPPAKRLSKHAPLIHIMKVKPERINLIIGSGGKKVKSIIEESGIEGIDTEDDGTVKITAKDLSSLERSKAIISNLTMVPTIGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSGWLPKAEDAFKVGDHIDVKLIEINDKGQLRLSHRAMLPDTDLDKSNANQPSGKLTEDGGTSEKSTDKSLLKKVTRLQKDGSAEVKIEQPNDKTSTPKVTVSSKRRSEDNSVIPSKKFIRKLVNPSQDKSLTNKDKIKKSSDNGVDSVPGKDENSLVSGEA* 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2015 944 CDD S1_PNPase 749 817 - -
Dod01g2015 944 CDD RNase_PH_PNPase_1 91 317 - -
Dod01g2015 944 MobiDBLite consensus disorder prediction 864 944 - -
Dod01g2015 944 Gene3D K Homology domain, type 1 676 748 IPR036612 GO:0003723
Dod01g2015 944 Pfam 3' exoribonuclease family, domain 2 234 296 IPR015847 -
Dod01g2015 944 CDD RNase_PH_PNPase_2 459 670 - -
Dod01g2015 944 ProSiteProfiles Type-1 KH domain profile. 679 739 - -
Dod01g2015 944 Pfam S1 RNA binding domain 756 818 IPR003029 GO:0003676
Dod01g2015 944 SUPERFAMILY Ribonuclease PH domain 2-like 233 317 IPR036345 -
Dod01g2015 944 SMART S1_6 747 818 IPR022967 -
Dod01g2015 944 MobiDBLite consensus disorder prediction 826 842 - -
Dod01g2015 944 Gene3D - 408 675 IPR027408 -
Dod01g2015 944 SMART kh_6 678 743 IPR004087 GO:0003676
Dod01g2015 944 MobiDBLite consensus disorder prediction 821 852 - -
Dod01g2015 944 Gene3D - 81 315 IPR027408 -
Dod01g2015 944 SUPERFAMILY Nucleic acid-binding proteins 744 822 IPR012340 -
Dod01g2015 944 CDD PNPase_KH 679 739 - -
Dod01g2015 944 Gene3D - 749 820 IPR012340 -
Dod01g2015 944 SUPERFAMILY Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 325 455 IPR036456 GO:0003723|GO:0006396
Dod01g2015 944 MobiDBLite consensus disorder prediction 914 929 - -
Dod01g2015 944 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, CHLOROPLASTIC 73 906 - -
Dod01g2015 944 ProSiteProfiles S1 domain profile. 749 818 IPR003029 GO:0003676
Dod01g2015 944 SUPERFAMILY Ribosomal protein S5 domain 2-like 432 604 IPR020568 -
Dod01g2015 944 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 73 906 IPR012162 GO:0003723|GO:0004654|GO:0006402
Dod01g2015 944 Pfam 3' exoribonuclease family, domain 1 459 592 IPR001247 -
Dod01g2015 944 Pfam 3' exoribonuclease family, domain 1 100 230 IPR001247 -
Dod01g2015 944 SUPERFAMILY Ribonuclease PH domain 2-like 586 674 IPR036345 -
Dod01g2015 944 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 682 767 IPR036612 GO:0003723
Dod01g2015 944 Hamap Polyribonucleotide nucleotidyltransferase [pnp]. 89 821 IPR012162 GO:0003723|GO:0004654|GO:0006402
Dod01g2015 944 SUPERFAMILY Ribosomal protein S5 domain 2-like 90 230 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2015 Dod-Chr1 55967262 55997701 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2015 K00962 - gmx:100785430 1295.41