Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1999 ATGAACGTCGATCGTCACCTGAAGAATCTCTCCGCCTCCTCGAAGCGCATCCCTTCGGACAGGGACTTCCATTTCTTCCGCAACTTCGAGGAGTTCAGGCGCCCGATCGAGGAAATCGCTCGTCGCTCTCAGTCGATGTTGGAGAGCATCGGTGCCTCGACGCATGCATGGAGCAGCGGCGTCGATTTCCCCTCCGACATCGACGACGCGTACGAGTGGGTTGTGGACATGAACGACGAGCTGCTGGAGTGGTTCGACGAGTCGGAGAGCGAGGTGAGGAAGGCGAGGGAGGAGGAGGAGTTCGAGGAGGTGGAGATGGAGAACGGGTTAGGGTTGGTTAGGGTCATGAAGAAGAAGGACGAAGATAAGAAGGTGAAAACAGCGGCGACGGCGAAGGAGGCGGCGGCAGGGGCGACGACGAAGGCGAAGGTTTCGTTTCATTTGGCGACGGTTAGGAAGCCTCAGGAAGTTTACGACATTGTGGTTAACAATGCTAACCAGCCGTTTGAGCATGTTTGGTTGGAGAAGAGTGAGGATGGTCTGACGTTTGTTCATCCTCTGGAGAAACACACTGCTTTTGATTTTGTTGATAAAGATCTTGAGGATCTAGTGCCAATAAAGCCTTCCGCACTAGAGTGCACCCCTTTCAAGCTTGTGGAGGATGTCAAAGGATTGAAGGAATTGGCTGCTAAGCTGCGTTCTGTTAATGAATTTGCGGTGGATTTGGAACATAATCAATATCGGTCTTTCCAAGGTTTGACTTGTTTGATGCAAATCTCAACCAGGACTGAAGATTTTATTGTAGATACTTTAAAGCTTCGCATTCATGTTGGACCTTATCCTGCGGGAAGTCTTCAAGGACCCTACAAAGAAGAAGATCGAGATATTGTGTGGTTGCAACGAGATTTTGGCATATATGTTTGTAATATGTTTGACACAGGCCAGGCTTCTAGGGTGTTACAATTGGAGAGATATAGCTTGCAATATCTTTTGCAACACTTCTGTGGGGTTACTGCTAACAAAGAATACCAGAATGCAGATTGGAGACAACGCCCTCTTCCTGCTGTGATGCTAAGATATGGCAGAGAAGATACACACTATCTGCTGTATATATATGATCTAATGAGGATCAAGCTATTTGCACTGTCTAAGGAACCTGGAAGTTCTGACAACCCTCTTTTGGAGGTTTACAAGCGCAGTTATGATGTCTGCATGCAACTATATGAGAAAGAGCTTCTAACAGAGGACTCTTACCTTCATATATATGGGTTGCAGGGGGCTGGTTTTAATGCTCAGCAGCTTGCCATTGTTTCAGGGCTTAATCAATGGCGGGACATTTTTGCTCGTGCAGATGATGAGAGTACTGGCTATATATTGCCGAATAAAGTTGTTCTTGAAATTGCTAAGCAGATGCCTGTCACTATAAGCAGTCTTCGGCGGGTGATAATGTCAAAGCTTCCATATGTTGACCGCAATCTTGATGTCATTGTCAACATTGTTAGACATTCTATTCAAAATGCTGCTGCCTTTGAAGAAACTGCATTACGTTTGAAAGAAGCACATGCGGCACGTGTGAAAGAAGCAAATGCAGCGAGTGTGGATGAGGCAAATGCAGCAACTGTGGAAGATGGGACTGAAGCTAAAGAAAGCATTGGAATTGATGAGGCCAATGCCACCTGCATTAATATCTCAGAGAAGTTTCCATTTTCTTCTGACCTGGAGTTCCGTTTTCAGCATGAAGATACAGATGGACAAGAAAAAATTAGATCCAACTGTCTCACTTCCGAACTCCCACAGGATAATGGAGCAAATGTTCAGGTACTAGAAACTGGTGCTTTTGATCGGGCACTGCTGGCCAATTCAGCGTCAAAACAGAAGCTTGATCCTGATGAAAAGGACAACAAACAGATCCAGCCAGAGCAGATTAGAAAGTCAGTCAGCCTTACCATTTGA 1953 0.4613 MNVDRHLKNLSASSKRIPSDRDFHFFRNFEEFRRPIEEIARRSQSMLESIGASTHAWSSGVDFPSDIDDAYEWVVDMNDELLEWFDESESEVRKAREEEEFEEVEMENGLGLVRVMKKKDEDKKVKTAATAKEAAAGATTKAKVSFHLATVRKPQEVYDIVVNNANQPFEHVWLEKSEDGLTFVHPLEKHTAFDFVDKDLEDLVPIKPSALECTPFKLVEDVKGLKELAAKLRSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIHVGPYPAGSLQGPYKEEDRDIVWLQRDFGIYVCNMFDTGQASRVLQLERYSLQYLLQHFCGVTANKEYQNADWRQRPLPAVMLRYGREDTHYLLYIYDLMRIKLFALSKEPGSSDNPLLEVYKRSYDVCMQLYEKELLTEDSYLHIYGLQGAGFNAQQLAIVSGLNQWRDIFARADDESTGYILPNKVVLEIAKQMPVTISSLRRVIMSKLPYVDRNLDVIVNIVRHSIQNAAAFEETALRLKEAHAARVKEANAASVDEANAATVEDGTEAKESIGIDEANATCINISEKFPFSSDLEFRFQHEDTDGQEKIRSNCLTSELPQDNGANVQVLETGAFDRALLANSASKQKLDPDEKDNKQIQPEQIRKSVSLTI* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1999 650 Pfam HRDC domain 433 483 IPR002121 GO:0003676
Dod01g1999 650 ProSiteProfiles HRDC domain profile. 430 510 IPR002121 GO:0003676
Dod01g1999 650 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 1 604 IPR045092 GO:0000175|GO:0000467
Dod01g1999 650 SUPERFAMILY Ribonuclease H-like 151 410 IPR012337 -
Dod01g1999 650 MobiDBLite consensus disorder prediction 625 639 - -
Dod01g1999 650 SMART 35exoneu6 216 380 IPR002562 GO:0003676|GO:0006139|GO:0008408
Dod01g1999 650 Gene3D - 150 415 IPR036397 GO:0003676
Dod01g1999 650 Pfam 3'-5' exonuclease 218 376 IPR002562 GO:0003676|GO:0006139|GO:0008408
Dod01g1999 650 Pfam PMC2NT (NUC016) domain 11 86 IPR012588 GO:0000176|GO:0006396
Dod01g1999 650 MobiDBLite consensus disorder prediction 623 650 - -
Dod01g1999 650 Gene3D HRDC domain 416 512 IPR044876 -
Dod01g1999 650 PANTHER 3'-5' EXONUCLEASE 1 604 - -
Dod01g1999 650 Coils Coil 85 107 - -
Dod01g1999 650 SUPERFAMILY HRDC-like 412 505 IPR010997 GO:0000166|GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1999 Dod-Chr1 55688803 55703555 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1999 K12591 - gmx:100804872 692.96