Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1998 ATGCAAGTTTTTCCATCTGAAGGTGAAAATGCTTTGTCAGTTGTTGGTCCAAGGCCAATGGAATGGTCTACTGTTCCGTATAGTGGTCCTCAAGCTCCTGGGCCTAATGGAAAGCAGCGGACATCAAGTTTGGAATCACCAATCATGTTGCTGACAGGTCACCAGAGTGCTATCTATACCATGAAGTTCAATCCAGCTGGATCAGTCATTGCTTCTGGATCTCATGACAGAGAAATTTTCCTCTGGAATGTTCATGGGGAGTGCAAGAACTTTATGATTCTAAAAGGTCACAAGAATGCAGTTTTAGACCTTCATTGGACTACAGATGGGACTCAGATAATCTCTGCCAGCCCTGACAAAACTCTGAGGGCATGGGATGTGGAAACAGGAAAACAAATTAAAAAGATGGTCGAGCATCTCTCATATGTTAATTCATGTTGTCCTTCTCGGAGGGGGCCACCTCTCGTTGTCAGTGGATCTGACGATGGAACTGCTAAACTGTGGGATATGCGTCAAAGGGGTTCCATCCAAACATTCCCAGATAAATACCAGATTACGGCTGTTAGCTTCTCTGATGCATCGGATAAGATCTACACCGGTGGTATTGATAATGATGTCAAGGTATGGGATTTGCGTAAAGGTGAGGTTATCATGACACTTCAAGGTCATCAAGATATGATCACTGGTATGCAACTGAGTCCTGATGGTTCCTACCTTCTTACTAATGGAATGGATTGCAAGCTTTGTATTTGGGATATGCGCCCATATGCCCCGCAAAATCGCTGTGTGAAGGTGTTGGAAGGGCACCAACACAACTTTGAAAAGAACTTGTTGAAATGTGGCTGGTCACCTGATGGAAGCAAGGTCACAGCTGGTAGCTCGGATCGAATGGTTTACATATGGGATACCACTTCTCGACGCATCTTGTATAAGCTTCCTGGGCACAATGGATCTGTTAATGAGAGTGTGTTTCATCCCAATGAACCTATTATTGGATCCTGCAGTAGTGACAAGCAGATTTATCTTGGCGAGATATGA 1038 0.4422 MQVFPSEGENALSVVGPRPMEWSTVPYSGPQAPGPNGKQRTSSLESPIMLLTGHQSAIYTMKFNPAGSVIASGSHDREIFLWNVHGECKNFMILKGHKNAVLDLHWTTDGTQIISASPDKTLRAWDVETGKQIKKMVEHLSYVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGSIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVIMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKVLEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHNGSVNESVFHPNEPIIGSCSSDKQIYLGEI* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1998 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 311 IPR001680 GO:0005515
Dod01g1998 345 ProSitePatterns Trp-Asp (WD) repeats signature. 289 303 IPR019775 -
Dod01g1998 345 SMART WD40_4 87 126 IPR001680 GO:0005515
Dod01g1998 345 SMART WD40_4 172 210 IPR001680 GO:0005515
Dod01g1998 345 SMART WD40_4 305 344 IPR001680 GO:0005515
Dod01g1998 345 SMART WD40_4 44 83 IPR001680 GO:0005515
Dod01g1998 345 SMART WD40_4 129 169 IPR001680 GO:0005515
Dod01g1998 345 SMART WD40_4 213 252 IPR001680 GO:0005515
Dod01g1998 345 SMART WD40_4 259 302 IPR001680 GO:0005515
Dod01g1998 345 SUPERFAMILY WD40 repeat-like 48 342 IPR036322 GO:0005515
Dod01g1998 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 51 84 IPR001680 GO:0005515
Dod01g1998 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 178 215 - -
Dod01g1998 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 254 - -
Dod01g1998 345 ProSitePatterns Trp-Asp (WD) repeats signature. 197 211 IPR019775 -
Dod01g1998 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 254 IPR001680 GO:0005515
Dod01g1998 345 MobiDBLite consensus disorder prediction 23 42 - -
Dod01g1998 345 PRINTS G protein beta WD-40 repeat signature 156 170 IPR020472 -
Dod01g1998 345 PRINTS G protein beta WD-40 repeat signature 70 84 IPR020472 -
Dod01g1998 345 PRINTS G protein beta WD-40 repeat signature 113 127 IPR020472 -
Dod01g1998 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 345 IPR001680 GO:0005515
Dod01g1998 345 Pfam WD domain, G-beta repeat 215 252 IPR001680 GO:0005515
Dod01g1998 345 Pfam WD domain, G-beta repeat 261 302 IPR001680 GO:0005515
Dod01g1998 345 Pfam WD domain, G-beta repeat 47 83 IPR001680 GO:0005515
Dod01g1998 345 Pfam WD domain, G-beta repeat 89 126 IPR001680 GO:0005515
Dod01g1998 345 Pfam WD domain, G-beta repeat 185 210 IPR001680 GO:0005515
Dod01g1998 345 Pfam WD domain, G-beta repeat 131 169 IPR001680 GO:0005515
Dod01g1998 345 ProSitePatterns Trp-Asp (WD) repeats signature. 156 170 IPR019775 -
Dod01g1998 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 345 - -
Dod01g1998 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 94 131 - -
Dod01g1998 345 ProSitePatterns Trp-Asp (WD) repeats signature. 70 84 IPR019775 -
Dod01g1998 345 PANTHER U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN 34 345 - -
Dod01g1998 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 94 135 IPR001680 GO:0005515
Dod01g1998 345 CDD WD40 51 342 - -
Dod01g1998 345 Gene3D - 43 345 IPR015943 GO:0005515
Dod01g1998 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 51 84 - -
Dod01g1998 345 PANTHER U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN 34 345 - -
Dod01g1998 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 185 219 IPR001680 GO:0005515
Dod01g1998 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 155 178 IPR001680 GO:0005515
Dod01g1998 345 ProSitePatterns Trp-Asp (WD) repeats signature. 113 127 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1998 Dod-Chr1 55683110 55686976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1998 132 340 Miscellaneous Gene Families AT5G08390 26.667 6.98e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1998 K12857 - gmx:100803276 704.131