Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1984 ATGGAAGTAGCTGTTTCTCCACAAACACAAAAGCATAATTTACAAGCTTCAGGTCGTAAAATTTCATCCACTCTGTCCCAGAAAGATCTGTGGCTTGTTGTGCGAGAAGGATCTCTGAATGATTTAGAGGCTGCCTTGGCGTTATTGAAGAAGAGTGGGGGTAATATCAATTTGAGGAACACCTTTGGGCTGACCCCTCTTCATATTGCAACTTGGAGAAACCACATTCCCATTGTAAGGAGGCTTCTCGCAGCTGGTGCAGATCCTGATTCTCGAGATGGGGAATCAGGATGGAGTAGCCTTCACAGGGCTCTGCATTTTGGGCATCTTGCTGTGGCAAGCGCCCTTCTTCAGCATGGTGCCTCCATTACATTGGAGGACTCAAAATCTCGAATACCTGTAGATCTGCTATCCGGCCCTGTACCACAGGTTGTGGGAAATGAACGCAAGTCAGTGGCTACTGAGGTCTTTAGTTGGGGTAGCGGTGCAAATTATCAGCTGGGAACTGGCAATGCGCACATCCAAAAGTTACCATGCAAAGTTGATTCACTTAATGGTTCATTCATAAAGTTGATTTCTGCAGCAAAGTTCCATAGTGTGGCACTTACTGCTCGTGGGGAAGTGTATACTTGGGGATTTGGAAGGGGAGGCCGTCTAGGGCACCCTGATTTTGACATACACAGTGGTCAAGCTGCTGTCATCACTCCCCGCCAGGTGACTTCTGGTCTGGGTTCCCGCAGAGTGATGGCAATTGCTGCAGCTAAGCATCATACTGTTATTGCTACTGAGGGTGGGGAAGTGTTCACTTGGGGATCCAATAGAGAGGGACAGCTAGGATACACTTCTGTTGATACACAACCAACACCTCGTAGAGTGAGTTCTCTAAGGTCAAAAATAATTGCTGTTGCTGCAGCAAACAAGCACACAGCTGTAGTTTCTGATTTAGGTGAAGTTTTTACTTGGGGTTCCAATAGAGAGGGTCAACTTGGTTATGGAACGTCAAACTCAGCATCTAATTACACCCCACATGTGGTTGAATCCTTGAAGGGAAAGACTTTAACCAAAGTTTCTGCTGCAAAATATCACACGGTTGTATTAGGATCTGATGGAGAGGTATACACTTGGGGTCATCGACTTGTTACTCCAAAACGTGTTGTGATTGCTAGGAACTTAAAGAAAAGTGGAAGCACTCCCTTAAAGTTTCATCGCATGGAACGACTTCATGTAGAATCTATAGCTGCGGGAATGGTACACAGCATGGCACTTACAGATGATGGTGCATTATTTTTTTGGGTTTCGTCTGATCCTGATCTCAGATGCCAACAGTTATATTCTATGTGCAGAAGAAATATGGTGAGCATATCTGCTGGAAAGTACTGGACCGCTGCAGTTACAGCTACTGGTGATGTTTACCTGTGGGATGGGAAGAAAGGTAAGGATAAGCCACCTGTTGCAACCAGGTTGCATGGTGTAAAGAAGGCTACTTCGGTTTCTGTTGGTGAAACACATTTGCTAATTGTGGCTTCCCTCTACCATCCTGCATATCCTCTCAACATGGTTGACAATTCGCAGAAGCTCAAGTTAAATGATAGGGATGATATGGAAGAGTTAAATGAGGATATTTTATTTGAGGAAATGGAATCCAATAATATGATATCTAATGTACAAGATAATTTTGGGCAGAAATCCGTACCTTGCTTGAAAAGCCTTTGCGAAAAAGTAGCAGCAGAATGTCTAGTGGAGCCACGGAACGCCATCCAACTGCTCGAGATTGCTGATTCTCTTGGAGCAGATGAACTGAGGAAGTATTGTGAGGAGATTGTGATGCGCAACCTTGATTATATATTTACAGTTTCATCCCATGCTGTGGCAAGCGCGTCATCAGATATTCTGGCTAATCTTGAGAGGTTGTTAGACCAGAGATCATCAGAGCCATGGAGTCACCGTCGGCTCCCTACTCCAACTGCTACTTTCCCTGCCATCATTAACAATGAAGAGGATGATAGTGAAATAGAGTTCCAAAGGACTCGTGACAAACCGATGAAAATGTGTGCATTATTGGAGAGAGATGAAAGAGGAGATTCCTTTCTACAACCCAAGGACGATCCCAATCAAGAAACCTCCAAAGTAGTCAGAGCAATAAGGAAGAAGTTGCAGCAGATCGAGATGCTTGAAGCTAAGCAATCAAATGGAAATCTTCTCGATGACCAGCAGATTGCAAAGATTCAATCTAAATCAGCACTTGAAAGCTCACTTGCAGAGCTTGGTGTTCCCATTGATACTTCAAATAGAGAATCGTCTTCTGTATCACCAGAAGGGAAAGGTAGTAAGAAGGGTAAACTATCGAAAAAGCAGAGGAGAAAGAGCAGCAAACCAAGTGTTGTGCAGACTGAAGTTGAATCTCTGTATTCTGCAAGGGAAGTGAGTCCCGAATCTGTGAAGGACTTGTTGGACACTGACGTCATGGTGGTTCCCAACTCAAAGGTGGAAGAGGATGCTGCACAAACTGCAGCTGACCAAGGTGCAAGTGCAAAAGATTTAGCTTTTGTACTACAGAAGAAAGATGGTATAGAGTTGCCGAAGGATAAGGGTCCGTCACTGAAGGTTTCTAAGAAGAAGAGCAAGAAGGGTGGGCTATCGATGTTTCTGAGTGGTGCTCTCGATGATGTTCCGAAAGAGGTGGCCCCCCCTCCCCCTCCACCAACACCAAGAAATGAGGGTCCTGCATGGGGCGGGGCCAAGTTCATGAAGGGTTCTGCTTCTCTACGTGAAATCCAGGATGAACAAAGCAAAACAAAGGGAAACCAGCCAGTTAGGAGCAAAGATAAGGTGGAAGATCTTTCTGATTTAGGCAGTGGTGGGAAAATAATTTTGAGTTCATTTCTTCCTTCGAGTCCGATATCCGTCGTCACCTCAACTCGTGGCTCCCAAGCATCTGATGGAGAAATAAGTACTCCTCCGTGGGCTGCTTCAGGAACCCCTCCTCAACTCTCTCGGCCGTCTTTTAGGGACATCCAAATGCAACAGGGAAAGAAACAACAAAGCCTTTCCCACAGTCCAAAGACTAGAACAGCCGGATTTACCATTGCTACCAGTCAAGGCTCGCCGGCTGAAGCAACTGCGGTGAGCCGCTGGTTCAAGCCGGAAGTGGAGGCACCATCCTCAATCCGTTCTATTCAGATTGAGGAAAAGGCTATGAAGGATCTCAAGCGCTTCTACAGCAGTGTGAAGATTGTCAGAAAGCAGTCTTAA 3252 0.4551 MEVAVSPQTQKHNLQASGRKISSTLSQKDLWLVVREGSLNDLEAALALLKKSGGNINLRNTFGLTPLHIATWRNHIPIVRRLLAAGADPDSRDGESGWSSLHRALHFGHLAVASALLQHGASITLEDSKSRIPVDLLSGPVPQVVGNERKSVATEVFSWGSGANYQLGTGNAHIQKLPCKVDSLNGSFIKLISAAKFHSVALTARGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVTSGLGSRRVMAIAAAKHHTVIATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLRSKIIAVAAANKHTAVVSDLGEVFTWGSNREGQLGYGTSNSASNYTPHVVESLKGKTLTKVSAAKYHTVVLGSDGEVYTWGHRLVTPKRVVIARNLKKSGSTPLKFHRMERLHVESIAAGMVHSMALTDDGALFFWVSSDPDLRCQQLYSMCRRNMVSISAGKYWTAAVTATGDVYLWDGKKGKDKPPVATRLHGVKKATSVSVGETHLLIVASLYHPAYPLNMVDNSQKLKLNDRDDMEELNEDILFEEMESNNMISNVQDNFGQKSVPCLKSLCEKVAAECLVEPRNAIQLLEIADSLGADELRKYCEEIVMRNLDYIFTVSSHAVASASSDILANLERLLDQRSSEPWSHRRLPTPTATFPAIINNEEDDSEIEFQRTRDKPMKMCALLERDERGDSFLQPKDDPNQETSKVVRAIRKKLQQIEMLEAKQSNGNLLDDQQIAKIQSKSALESSLAELGVPIDTSNRESSSVSPEGKGSKKGKLSKKQRRKSSKPSVVQTEVESLYSAREVSPESVKDLLDTDVMVVPNSKVEEDAAQTAADQGASAKDLAFVLQKKDGIELPKDKGPSLKVSKKKSKKGGLSMFLSGALDDVPKEVAPPPPPPTPRNEGPAWGGAKFMKGSASLREIQDEQSKTKGNQPVRSKDKVEDLSDLGSGGKIILSSFLPSSPISVVTSTRGSQASDGEISTPPWAASGTPPQLSRPSFRDIQMQQGKKQQSLSHSPKTRTAGFTIATSQGSPAEATAVSRWFKPEVEAPSSIRSIQIEEKAMKDLKRFYSSVKIVRKQS* 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1984 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 265 312 IPR000408 -
Dod01g1984 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 206 260 IPR000408 -
Dod01g1984 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 316 366 IPR000408 -
Dod01g1984 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 155 202 IPR000408 -
Dod01g1984 1083 Gene3D - 388 510 IPR009091 -
Dod01g1984 1083 Gene3D - 143 387 IPR009091 -
Dod01g1984 1083 MobiDBLite consensus disorder prediction 758 773 - -
Dod01g1984 1083 SMART ANK_2a 62 91 IPR002110 GO:0005515
Dod01g1984 1083 SMART ANK_2a 96 125 IPR002110 GO:0005515
Dod01g1984 1083 SMART ANK_2a 25 58 IPR002110 GO:0005515
Dod01g1984 1083 MobiDBLite consensus disorder prediction 758 817 - -
Dod01g1984 1083 ProSiteProfiles Ankyrin repeat region circular profile. 96 127 - -
Dod01g1984 1083 MobiDBLite consensus disorder prediction 892 906 - -
Dod01g1984 1083 ProSiteProfiles Ankyrin repeat profile. 62 94 IPR002110 GO:0005515
Dod01g1984 1083 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 1082 - -
Dod01g1984 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 264 IPR000408 -
Dod01g1984 1083 MobiDBLite consensus disorder prediction 966 1035 - -
Dod01g1984 1083 SUPERFAMILY RCC1/BLIP-II 396 507 IPR009091 -
Dod01g1984 1083 ProSiteProfiles Ankyrin repeat region circular profile. 62 93 - -
Dod01g1984 1083 PANTHER ANKYRIN REPEAT FAMILY PROTEIN / REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 1 1082 - -
Dod01g1984 1083 Pfam Ankyrin repeats (3 copies) 42 127 IPR002110 GO:0005515
Dod01g1984 1083 Gene3D - 23 142 IPR036770 -
Dod01g1984 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 154 205 IPR000408 -
Dod01g1984 1083 SUPERFAMILY Ankyrin repeat 40 136 IPR036770 -
Dod01g1984 1083 MobiDBLite consensus disorder prediction 924 949 - -
Dod01g1984 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 315 IPR000408 -
Dod01g1984 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 425 IPR000408 -
Dod01g1984 1083 PRINTS Chromosome condensation regulator RCC1 signature 208 224 IPR000408 -
Dod01g1984 1083 PRINTS Chromosome condensation regulator RCC1 signature 189 202 IPR000408 -
Dod01g1984 1083 PRINTS Chromosome condensation regulator RCC1 signature 155 171 IPR000408 -
Dod01g1984 1083 PRINTS Chromosome condensation regulator RCC1 signature 265 281 IPR000408 -
Dod01g1984 1083 PRINTS Chromosome condensation regulator RCC1 signature 302 318 IPR000408 -
Dod01g1984 1083 PRINTS Chromosome condensation regulator RCC1 signature 318 332 IPR000408 -
Dod01g1984 1083 PRINTS Chromosome condensation regulator RCC1 signature 415 433 IPR000408 -
Dod01g1984 1083 MobiDBLite consensus disorder prediction 858 950 - -
Dod01g1984 1083 MobiDBLite consensus disorder prediction 690 709 - -
Dod01g1984 1083 SUPERFAMILY RCC1/BLIP-II 120 431 IPR009091 -
Dod01g1984 1083 ProSiteProfiles Ankyrin repeat profile. 96 128 IPR002110 GO:0005515
Dod01g1984 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 316 369 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1984 Dod-Chr1 55497299 55504427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1984 35 136 Acyl Lipid Metabolism Gene Families AT5G53470 33.333 6.54e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1984 K24810 - gmx:100800604 1717.21