Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1941 ATGGTGGCTGACCCAAAAAATGTCACCATGGATAAGCTAAACAGTCTGGAGGAATCTGACAGAATTTTCAGGTTGCCGGAGGAGCTTCGCAAGGCCTGGGTCGCTGGTGCTTGGCCTCGGGTCACGGCGGATCTGAGGCTTGGGAGGAGCTTCGTGGATGGGCTTCGATGGGTCGCCGAGGAGGCTGAGGGCTGGTTCACTGCCCCTCACCGGCGGATCTGCGGCATGCCGACGGCGGGTCTGGGGGTGGCCGCGATGCTGGAGAAGAGCTTTGTTCTGATGATGGCCTGGTGGATGAGCCTCGCCAGCTCCAGAACACAACAGAAACTCAGACCAGAGATGGCTACTCCACAACAGTGTCGCCCGCTTCAAGACCGAGTCGCCATCGTCACCGGCTCATCCCGCGGAATCGGCCGGGAGATCGCGCTCCACCTCGCCTCACTTGGCGCCAGAATCGTCCTCAACTACACCTCCAACTCGTCCCTAGCCGACTCACTCGCCGCTCAGATCAACTCCGACACCGGCGGCAGCGGCGGCCCTCTCCCTCGGGCCATCGCCGTACGCGGCGACGTTTCTGACCCGGCCGACGTGAAGACCCTCTTCGACTCTGCGGAGCGCGCCTTCGACTCGGCGGTTCACATCCTCGTCAACTCTGCTGGTGTTATTGATAGCAATTACCGTTCCATAGCTGACATCACCGTGGAGGACTTTGATCGTATTTTCAGTGTAAATGCAAGAGGGGCGTTCCTGTGCTGCAAAGAGGCAGCAAACCGTTTGATACACGGTGGTGGAGGTCGAATTATATTGTTAAGTTCATCAATGGTGGCTGCACTGAGACCAAATTTTGGGGCATATGCAGCATCCAAAGCAGCTGTTGAGGCCATGACACACATTCTGGCAAAAGAGCTAAAGGGAACAGGGATTACAGCCAACTGTGTTGCACCTGGGCCAATTGCAACTGAAATGTACTTTGCTGGGAAGACTGAAGAGCAGGTGAAAGCGAATATTGCTGAGTCTCCACTCAGTAGGCTTGGTGAGCCCAAGGATGTAGCCCCTTTGGTTGGATTTTTGGCAACTGATGCTGGTGAGTGGGTTAATGGTCAGGTTATTCGCGTTAATGGTGGCTATGTTTCTTAG 1137 0.5585 MVADPKNVTMDKLNSLEESDRIFRLPEELRKAWVAGAWPRVTADLRLGRSFVDGLRWVAEEAEGWFTAPHRRICGMPTAGLGVAAMLEKSFVLMMAWWMSLASSRTQQKLRPEMATPQQCRPLQDRVAIVTGSSRGIGREIALHLASLGARIVLNYTSNSSLADSLAAQINSDTGGSGGPLPRAIAVRGDVSDPADVKTLFDSAERAFDSAVHILVNSAGVIDSNYRSIADITVEDFDRIFSVNARGAFLCCKEAANRLIHGGGGRIILLSSSMVAALRPNFGAYAASKAAVEAMTHILAKELKGTGITANCVAPGPIATEMYFAGKTEEQVKANIAESPLSRLGEPKDVAPLVGFLATDAGEWVNGQVIRVNGGYVS* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1941 378 PRINTS Glucose/ribitol dehydrogenase family signature 127 144 IPR002347 -
Dod01g1941 378 PRINTS Glucose/ribitol dehydrogenase family signature 210 221 IPR002347 -
Dod01g1941 378 PRINTS Glucose/ribitol dehydrogenase family signature 306 323 IPR002347 -
Dod01g1941 378 PRINTS Glucose/ribitol dehydrogenase family signature 285 304 IPR002347 -
Dod01g1941 378 PRINTS Glucose/ribitol dehydrogenase family signature 259 275 IPR002347 -
Dod01g1941 378 PRINTS Glucose/ribitol dehydrogenase family signature 340 360 IPR002347 -
Dod01g1941 378 CDD THN_reductase-like_SDR_c 123 377 - -
Dod01g1941 378 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 116 377 - -
Dod01g1941 378 PANTHER NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED 116 377 - -
Dod01g1941 378 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 126 316 - -
Dod01g1941 378 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 272 300 IPR020904 GO:0016491
Dod01g1941 378 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 265 273 IPR002347 -
Dod01g1941 378 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 210 221 IPR002347 -
Dod01g1941 378 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 285 304 IPR002347 -
Dod01g1941 378 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 124 376 IPR036291 -
Dod01g1941 378 Pfam Enoyl-(Acyl carrier protein) reductase 132 376 - -
Dod01g1941 378 Gene3D - 103 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1941 Dod-Chr1 54662043 54670407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1941 108 375 Acyl Lipid Metabolism Gene Families AT1G24360 32.103 1.32e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1941 K00059 - gmx:100809416 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1941 01 54662043 54670407 Dod01g1941 01 54662043 54670407 ECH