Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1905 ATGGGTTCTTCTCTGTTGACTCTATTTCTGATTTTCACATCACTGGTCTCTGCTGCACTCTGTGGCACCCCTAGGAAACCTGTGGATGTGCAATTTGGCCGAAACTATGTCCCAACTTGGGCTTATGATCACATCAAATACTTCAACGGTGGTTCTGAGATCCAGCTTCATCTTGACAAGTACACTGGCACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGTACATAAAGATGGTTCCTGGTGATTCAGCTGGCACTGTCACTGCTTTCTATTTGTCTTCCCAAACCGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTTTGCAAACAAATGTGTTCACCGGAGGCAAGGGTGATAGGGAACAGAGAATCTATCTGTGGTTTGATCCCACAATAGCATACCACAGTTACTCAATTCTTTGGAACATGGATCAAATTGTGTTCCTTGTGGATGATGTCCCTATCAGGGTGTTTAAGAACAGCAAGGACCTGGGAGTGAAATTCCCATTTGACCAGCCCATGAAGTTATACAACAGCCTGTGGAATGCTGATGACTGGGCCACAAGGGGTGGTTTGGAGAAAACAGATTGGTCCAAAGCACCCTTCATAGCATCCTACAAAGGGTTCCACATTGATGGGTGTGAGGCCTCTGTGAATGAGAAGTTCTGTGCCACACAAGGCAAGAGGTGGTGGGATCAGCCTGAGTTCCGTGACCTTGATGCTGCTCAATGGAGAAGGCTCAGATGGGTGCGCCAGAAATACACCATCTACAACTATTGCACTGATAGGAAGCGCTACCCTCAACTTCCCCCTGAATGCAAAAGAGATCGTGACATTTAA 882 0.466 MGSSLLTLFLIFTSLVSAALCGTPRKPVDVQFGRNYVPTWAYDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYLSSQTAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTIAYHSYSILWNMDQIVFLVDDVPIRVFKNSKDLGVKFPFDQPMKLYNSLWNADDWATRGGLEKTDWSKAPFIASYKGFHIDGCEASVNEKFCATQGKRWWDQPEFRDLDAAQWRRLRWVRQKYTIYNYCTDRKRYPQLPPECKRDRDI* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1905 293 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 19 220 IPR000757 GO:0004553|GO:0005975
Dod01g1905 293 CDD GH16_XET 27 287 IPR016455 GO:0010411|GO:0016762|GO:0042546
Dod01g1905 293 ProSitePatterns Glycosyl hydrolases family 16 active sites. 106 116 IPR008263 GO:0004553|GO:0005975
Dod01g1905 293 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 240 287 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Dod01g1905 293 PIRSF EndGlu_transf 2 292 IPR016455 GO:0010411|GO:0016762|GO:0042546
Dod01g1905 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 2 291 IPR044791 GO:0004553
Dod01g1905 293 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 291 IPR013320 -
Dod01g1905 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 2 291 - -
Dod01g1905 293 Pfam Glycosyl hydrolases family 16 33 213 IPR000757 GO:0004553|GO:0005975
Dod01g1905 293 Gene3D - 18 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1905 Dod-Chr1 53956831 53958796 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1905 1 293 Glycoside Hydrolase AT5G13870 78.498 8.65e-180 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1905 K08235 - gmx:547775 565.074