Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1904 ATGGGTTCTTCTTTGTGGACAGTGTGTGTAATTTTGGCATCATTGGCCTCAGCTGCAATCTGTGCCACCCCAAGGAGACCTGTGGATGTTCAATTTGGCAGAAACTACGTCCCAACTTGGGCCTATGATCACATCAAATACTTCAATGGTGGTAATGAGGTTCAGCTTCTTCTTGACAAATATACAGCAGGCACTGGCTTCCAGTCCAAAGGATCATACTTGTTTGGTCACTTCAGCATGTACATAAAGATGGTTCCCCGTGATTCAGCTGGCACTGTCACTGCTTTCTATCTATCTTCGCAAAACTCGGAGCACGATGAGATAGACTTTGAGTTCTTGGGTAACAGAACAGGGCAACCTTACATTTTGCAAACAAATGTATTCACCGGTGGCAAGGGTGACAGGGAACAGAGAATCTACCTCTGGTTTGACCCTACTAAAGAATACCACAGATACTCCGTCCTATGGAACTTGTATCAGATTGTGTTCTTTGTGGATGACATCCCAATAAGGGTGTTCAAGAACAACAATGACTTGGGAGTGAAATTCCCCTTCAACCAACCCATGAAGATATACAACAGCTTGTGGAATGCTGATGATTGGGCCACAAGGGGAGGTTTGGAGAAAACAGATTGGTCCAAGGCACCCTTCATTGCAACCTACAAGGGGTTCCACATTGATGGGTGTGAGGCCTCTGTGAACGACAAATTCTGTGCCACACAAGGCAAGAGGTGGTGGGATCAGCCAGAGTTCAGGGACCTTGATGCTACTCAATGGAGATGGCTCAGGTGGGTGCGCCAGAAACACACCATCTACAATTACTGTGCTGACAGGAAACGCTACCCTCAAATCCCCCCTGAATGCACAAGAAACCGTGACCTTTAA 885 0.4655 MGSSLWTVCVILASLASAAICATPRRPVDVQFGRNYVPTWAYDHIKYFNGGNEVQLLLDKYTAGTGFQSKGSYLFGHFSMYIKMVPRDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEYHRYSVLWNLYQIVFFVDDIPIRVFKNNNDLGVKFPFNQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIATYKGFHIDGCEASVNDKFCATQGKRWWDQPEFRDLDATQWRWLRWVRQKHTIYNYCADRKRYPQIPPECTRNRDL* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1904 294 CDD GH16_XET 27 288 IPR016455 GO:0010411|GO:0016762|GO:0042546
Dod01g1904 294 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 19 221 IPR000757 GO:0004553|GO:0005975
Dod01g1904 294 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 2 292 - -
Dod01g1904 294 Pfam Glycosyl hydrolases family 16 33 214 IPR000757 GO:0004553|GO:0005975
Dod01g1904 294 ProSitePatterns Glycosyl hydrolases family 16 active sites. 107 117 IPR008263 GO:0004553|GO:0005975
Dod01g1904 294 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 292 IPR013320 -
Dod01g1904 294 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 241 288 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Dod01g1904 294 Gene3D - 17 294 - -
Dod01g1904 294 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 2 292 IPR044791 GO:0004553
Dod01g1904 294 PIRSF EndGlu_transf 2 293 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1904 Dod-Chr1 53925171 53927207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1904 1 294 Glycoside Hydrolase AT5G13870 76.190 5.08e-176 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1904 K08235 - gmx:547775 556.599