Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1885 ATGGGGATGAAGCCGAAGAAGGAGACGAAACCGGCAGTGCCGGTGACGATGGATCACGTGATGCTGGCGTCGCAGGAGACGAAGGAGGCGAGGGAGACTCGGATTCGGGGGATGTTCGGGTTCTTCGACAAGGAGAACCGGGGGTACCTGGACTACGGGAGCATCGAGGAGGGGCTTTCGGCGCTCCAGATACCTTCGGAGTACAAGTACGCCAGGGACCTGCTGAACGCTTGCGACAGGGACAAGGACGGGAGGGTTGATTATGATGAGTTCAAGAGGTACATGGATGACAAGGAGCTCGAGCTTTACCGCATATTCCAGGCCATTGATGTCGAGCACAATGGCTCTATTCTCCCCGAGGAGCTCTGGGAAGCACTCATAAGAGCAGGGATTCAGATTGATGATGAGGAACTTGCTCGTTTTGTTGAGCGCGTTGATAAGGATAATAACGGGGTTATAACATTTGAAGAATGGCGGGATTTTCTGCTGCTTTATCCTCATGAAGCAACCATGGAGAACATTTACCACTATTTGGAGAGGATTTGCATGGTTGATATTGGGGAACAGACTGTTGTTATTCCAGGAGGCATAGGTAAGCACATTCATGCAAGTAGGTATCTGATTGCTGGAGGAGTAGCTGGTGCAGCATCACGCACAGCAACTGCACCCCTTGATCGCCTAAAGGTTGTCTTGCAAGTCCAAACAACACGAGCCCGTATAATGCCAGCAGTAAAAGATATATGGAAAGAAGGCGGGCTCTTAGGGTTTTTTCGAGGCAATGGCTTAAATGTTCTGAAGGTGGCCCCTGAGAGTGCCATTAGATTTTATACCTATGAGATGCTGAAGACTGCCATTGCAAATGCTAAAGGAGAAGAGGCAAAGACTGGTATAGGAACTGTGGGCCTGCTGCTAGCTGGTGGGATAGCCGGTGCTGTAGCTCAAACTGCAATATATCCAATGGATCTCGTTAAAACACGACTGCAAACCTATGCTTGTGAAAGTGGAAGAGTTCCTAGTCTTGGAACCCTATCAAAAGATATATGGGTTCAGGAAGGACCCCGGGCATTTTATAGGGGATTAATTCCTTCTCTTCTTGGGATTATCCCCTATGCTGGCATAGATCTTGCTGCATACGAGACCTTGAAGGATATGTCTAGGAAGTATATTCTTCATGATGGAGAACCTGGCCCTCTTGTACAATTAGGATGCGGTACTGTATCAGGAGCCCTTGGAGCAACTTGTGTTTACCCATTGCAGGTCATCAGAACAAGAATGCAGGCTCAACGTTCTTATAAGGGAATGGCTGATGTATTCAGGAAAACTTTTGAACATGAAGGGTTTAAGGGATTCTACAAAGGAATATTTCCTAACCTGCTCAAAGTGGTACCATCGGCAAGTATCACTTATATGGTCTATGAATCTATGAAAAAGGGTTTGGAATTGGATTGA 1449 0.4734 MGMKPKKETKPAVPVTMDHVMLASQETKEARETRIRGMFGFFDKENRGYLDYGSIEEGLSALQIPSEYKYARDLLNACDRDKDGRVDYDEFKRYMDDKELELYRIFQAIDVEHNGSILPEELWEALIRAGIQIDDEELARFVERVDKDNNGVITFEEWRDFLLLYPHEATMENIYHYLERICMVDIGEQTVVIPGGIGKHIHASRYLIAGGVAGAASRTATAPLDRLKVVLQVQTTRARIMPAVKDIWKEGGLLGFFRGNGLNVLKVAPESAIRFYTYEMLKTAIANAKGEEAKTGIGTVGLLLAGGIAGAVAQTAIYPMDLVKTRLQTYACESGRVPSLGTLSKDIWVQEGPRAFYRGLIPSLLGIIPYAGIDLAAYETLKDMSRKYILHDGEPGPLVQLGCGTVSGALGATCVYPLQVIRTRMQAQRSYKGMADVFRKTFEHEGFKGFYKGIFPNLLKVVPSASITYMVYESMKKGLELD* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1885 482 PRINTS Mitochondrial carrier protein signature 404 426 IPR002067 GO:0055085
Dod01g1885 482 PRINTS Mitochondrial carrier protein signature 206 219 IPR002067 GO:0055085
Dod01g1885 482 PRINTS Mitochondrial carrier protein signature 312 330 IPR002067 GO:0055085
Dod01g1885 482 PRINTS Mitochondrial carrier protein signature 357 375 IPR002067 GO:0055085
Dod01g1885 482 PRINTS Mitochondrial carrier protein signature 219 233 IPR002067 GO:0055085
Dod01g1885 482 PRINTS Mitochondrial carrier protein signature 259 279 IPR002067 GO:0055085
Dod01g1885 482 SUPERFAMILY Mitochondrial carrier 199 473 IPR023395 -
Dod01g1885 482 Gene3D - 113 188 - -
Dod01g1885 482 CDD EFh 34 95 IPR002048 GO:0005509
Dod01g1885 482 ProSiteProfiles EF-hand calcium-binding domain profile. 102 132 IPR002048 GO:0005509
Dod01g1885 482 SMART efh_1 70 98 IPR002048 GO:0005509
Dod01g1885 482 SMART efh_1 137 165 IPR002048 GO:0005509
Dod01g1885 482 SMART efh_1 101 129 IPR002048 GO:0005509
Dod01g1885 482 SMART efh_1 34 62 IPR002048 GO:0005509
Dod01g1885 482 Gene3D Mitochondrial carrier domain 197 480 IPR023395 -
Dod01g1885 482 ProSiteProfiles Solute carrier (Solcar) repeat profile. 201 284 IPR018108 -
Dod01g1885 482 SUPERFAMILY EF-hand 27 187 IPR011992 -
Dod01g1885 482 ProSiteProfiles Solute carrier (Solcar) repeat profile. 297 384 IPR018108 -
Dod01g1885 482 ProSitePatterns EF-hand calcium-binding domain. 146 158 IPR018247 -
Dod01g1885 482 ProSitePatterns EF-hand calcium-binding domain. 79 91 IPR018247 -
Dod01g1885 482 PANTHER CALCIUM-BINDING MITOCHONDRIAL CARRIER PROTEIN SCAMC-1-B-LIKE 47 482 - -
Dod01g1885 482 ProSiteProfiles EF-hand calcium-binding domain profile. 66 101 IPR002048 GO:0005509
Dod01g1885 482 Pfam EF-hand domain pair 101 160 IPR002048 GO:0005509
Dod01g1885 482 Gene3D - 2 102 - -
Dod01g1885 482 ProSiteProfiles EF-hand calcium-binding domain profile. 133 168 IPR002048 GO:0005509
Dod01g1885 482 Pfam Mitochondrial carrier protein 396 479 IPR018108 -
Dod01g1885 482 Pfam Mitochondrial carrier protein 200 287 IPR018108 -
Dod01g1885 482 Pfam Mitochondrial carrier protein 299 387 IPR018108 -
Dod01g1885 482 Pfam EF-hand domain pair 65 97 IPR002048 GO:0005509
Dod01g1885 482 ProSiteProfiles Solute carrier (Solcar) repeat profile. 395 478 IPR018108 -
Dod01g1885 482 PANTHER SOLUTE CARRIER FAMILY 25 47 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1885 Dod-Chr1 53672209 53676469 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1885 10 482 EF-hand Containing Proteins AT5G51050 72.363 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1885 K14684 - gmx:100775805 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1885 01 53672209 53676469 Dod01g1885 01 53672209 53676469 ECH