Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1871 ATGTTGAGGGTTGCAGCCAAGAGGCTTTCTTCTCTGTCCTCCTCATGGAGAGCTAACCACGCGGCCTCCGCCTTCGTGTCTCGGAACCCCTGTCGCTTCTTCCAACGAACGCGGATCCCCTCCCCTGCCCGACTGCCTTCTCCCCTTCAGAGATGTTCAGGAAGAAGTAGATGGCGGAGATTAATGGGGTTTGGGTGGTTGCAGTGGCTTGGAATGGGGGTAATGGCAGAGAGGGAAAGACTTGTGTATATGTGTCTAGGCGTGGGGTGTGTCGTTATAGCGTTTCTGGCTCAGGGCAGTTCTGGTTTTGCGACTGAATCACTGATCCACTCCAAAGAGAACAGCATTATTCCTGAAATTCCAGCAACTGTTGCTGCTGTTAAAAACCCGTCCTCTAAGATTGTATATGATGAACACAATCATGAACGGTATCCTCCAGGTGACCCAAGCAAGAGGGCATTTGCCTACTTTGTCCTAACAGGTGGTAGGTTTGTTTATGCCTCTCTAGTCCGTCTCCTCATCCTCAAGTTTGTGCTCAGCATGTCAGCCAGTAAGGATGTTCTTGCTCTGGCTTCACTTGAAGTTGATCTCTCCAGCATTGAGCCGGGCACCACTGTGACTGTTAAGTGGCGGGGAAAGCCGGTTTTCATCAGGCGCAGAACAGAAGATGATATTGAGCTGGCAAATAGTGTGGATGTTGGTTCTCTTCGTGATCCCCAGCAGGATTCAGAGAGAGTCAAGAATCCAGAATGGCTCATTGTGATTGGGGTCTGCACACATTTGGGTTGCATCCCCTTGCCAAATGCTGGTGACTTTGGTGGTTGGTTTTGTCCATGCCATGGTTCACATTATGATATTTCTGGAAGAATTAGGAAAGGACCGGCACCATACAATCTGGAGGTACCAACTTATACCTTCTTGGAAGAAAACAAGCTGATGATTGGTTGA 948 0.4916 MLRVAAKRLSSLSSSWRANHAASAFVSRNPCRFFQRTRIPSPARLPSPLQRCSGRSRWRRLMGFGWLQWLGMGVMAERERLVYMCLGVGCVVIAFLAQGSSGFATESLIHSKENSIIPEIPATVAAVKNPSSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDIELANSVDVGSLRDPQQDSERVKNPEWLIVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYTFLEENKLMIG* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1871 315 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 94 315 IPR014349 GO:0051537
Dod01g1871 315 PRINTS Rieske 2Fe-2S subunit signature 253 264 IPR005805 GO:0016020|GO:0051537
Dod01g1871 315 PRINTS Rieske 2Fe-2S subunit signature 275 287 IPR005805 GO:0016020|GO:0051537
Dod01g1871 315 PRINTS Rieske 2Fe-2S subunit signature 287 299 IPR005805 GO:0016020|GO:0051537
Dod01g1871 315 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 245 313 IPR017941 GO:0051537
Dod01g1871 315 SUPERFAMILY ISP transmembrane anchor 132 188 - -
Dod01g1871 315 Pfam Ubiquinol cytochrome reductase transmembrane region 137 186 IPR004192 GO:0008121
Dod01g1871 315 CDD Rieske_cytochrome_bc1 192 315 - -
Dod01g1871 315 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 94 315 - -
Dod01g1871 315 SUPERFAMILY ISP domain 177 314 IPR036922 GO:0051537
Dod01g1871 315 Gene3D - 184 315 IPR036922 GO:0051537
Dod01g1871 315 TIGRFAM Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 165 315 IPR006317 GO:0008121
Dod01g1871 315 Pfam Rieske [2Fe-2S] domain 198 301 IPR017941 GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1871 Dod-Chr1 53511088 53514318 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1871 K00411 - gmx:100806917 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1871 01 53511088 53514318 Dod01g1871 01 53511088 53514318 ECH