Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1769 ATGCTGCCGCCAAAACTGGGCCCGTTGCTCAGACACTCTATCGACTCACCACAATCTGCGCTGCCAAGAGCATTCTCAACCATTCTGCCGCCACCATCTCCAAATGGTCTCTCTCTTCTGGCCGACAAATGCACCAGCATGGACCACCTCAAACAGTTGCACGCCCAGATGATCGTCTCCGCCCGCATCCACGACCCCTTCGCCGCCAGCCGCCTCCTCTCCTCCTGCTCCCTCTCCCCCTTCGCCGACCTCACCCACGCTTCCAGAATCTTCTCCTCCCTCTCCTTCCCTCCCAACACCTTCATGTGGAACACCCTCATTCGCGCCCACTCCAACAACAACAACAACCACGCCCTCCTTTCCCTCTCCCTTTACGTCAACATGAGGAGGCTCGGCGCCCTCCCCGGAAAACACACCTTCCCCTTCCTCCTCAAGGCTTGCTCCTTCCTCCGCTCCCTGAAAGCCTCCAAACAGGTCCACTCCCACGTGCTGAAATTCGGGCTCTGCTCCGATTCCCACGTGGCCAATGGTCTCGTCAGGGCTTACTCTGTTTCCGGCGATTTGGCCTCTGCGCGCCATGTGTTCGATGAAACCGCGCACAGAAGTTTGAGCCTTTGGACCACGATTATCTGTGGATACGCTCAGAATTTCAGTTCCAACGAGGCTCTGGCGCTTTTTGATGCGATGGTTAGTGAGGGGTTGGAGCCAAATGGTGCCACGCTGGCTTCGGTGTTGTCGGCTTGCGCGCGATCGAGTTGTCTCGAGCTTGGGGAGAGGATTCATGAGTTTATGAAGGTGAAGGGGATTGAAGTTGGAGTGATTCTTGGGACCGCGTTGGCTTACATGTATGCAAAGAATGGGCAGATTGCAATGGCTCAGAAGATGTTTGATGAAATGACTGAGAGGAATGTTGTTACTTGGAATGCTATGATCTGTGGTTTGGCTGCTCATGGACATGTTGAAGATGCTCTTGGTCTGTTTGAGAAGCTGAAGAAAGAGCAAGTTGTTGTTCCGAATGATGTCACCTTCGTTGGGGTTTTGTCGGCTTGTTGTCATGCTGGGTTGGTTGATGTTGGTCGCGATATTTTTTATTCGATGAAGAAGGTATATGGGATTGAGCCAAAGATAGAACATTATGGGTGCTTGGTTGATCTTCTTGGGAGAGGAGGTAAGTTGCTAGAGGCAGAGGAATTGATAAAAGGAATGCCGTGGAAGGCTGATGTTGTTATTTTAGGAGCCTTGTTGGCATCCTGCAAAAATAATGGAAATACCGAGGTCGCTGAAAGAGTGGTGAAAGAAATTCTGACTTTGGAACCGCATAATCATGGAGTTCATGTTGCTTTGTCAAATATGTATGCAGAGGCTGGAGAATGGCAGGAAGTATTTAGACTGAGGAAGGTTATGAAAGAAGAGAGACTAAAGAAAGCTCCTGGGTGGAGCCTTGTTGCCACGTAA 1455 0.5107 MLPPKLGPLLRHSIDSPQSALPRAFSTILPPPSPNGLSLLADKCTSMDHLKQLHAQMIVSARIHDPFAASRLLSSCSLSPFADLTHASRIFSSLSFPPNTFMWNTLIRAHSNNNNNHALLSLSLYVNMRRLGALPGKHTFPFLLKACSFLRSLKASKQVHSHVLKFGLCSDSHVANGLVRAYSVSGDLASARHVFDETAHRSLSLWTTIICGYAQNFSSNEALALFDAMVSEGLEPNGATLASVLSACARSSCLELGERIHEFMKVKGIEVGVILGTALAYMYAKNGQIAMAQKMFDEMTERNVVTWNAMICGLAAHGHVEDALGLFEKLKKEQVVVPNDVTFVGVLSACCHAGLVDVGRDIFYSMKKVYGIEPKIEHYGCLVDLLGRGGKLLEAEELIKGMPWKADVVILGALLASCKNNGNTEVAERVVKEILTLEPHNHGVHVALSNMYAEAGEWQEVFRLRKVMKEERLKKAPGWSLVAT* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1769 484 Pfam PPR repeat 378 403 IPR002885 -
Dod01g1769 484 TIGRFAM PPR: pentatricopeptide repeat domain 305 339 IPR002885 -
Dod01g1769 484 TIGRFAM PPR: pentatricopeptide repeat domain 341 374 IPR002885 -
Dod01g1769 484 TIGRFAM PPR: pentatricopeptide repeat domain 205 237 IPR002885 -
Dod01g1769 484 Gene3D Tetratricopeptide repeat domain 38 183 IPR011990 GO:0005515
Dod01g1769 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Dod01g1769 484 Pfam PPR repeat family 205 250 IPR002885 -
Dod01g1769 484 Pfam PPR repeat family 302 352 IPR002885 -
Dod01g1769 484 Pfam E motif 423 482 IPR046848 -
Dod01g1769 484 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 34 483 - -
Dod01g1769 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Dod01g1769 484 Gene3D Tetratricopeptide repeat domain 335 479 IPR011990 GO:0005515
Dod01g1769 484 Gene3D Tetratricopeptide repeat domain 218 334 IPR011990 GO:0005515
Dod01g1769 484 PANTHER OS11G0483950 PROTEIN 34 483 - -
Dod01g1769 484 SUPERFAMILY TPR-like 279 460 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1769 Dod-Chr1 51500878 51503960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1769 37 482 Glycoside Hydrolase AT3G49170 33.703 1.55e-72 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1769 - - mtr:MTR_7g033400 697.197