Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1752 ATGCTCTTGCGTCCTAGAAGCTTCCGTTCACCGTTGGCATCTTCTGGAGACTGTTGGCATAAAGAACAGTGTCAAGACCTTACGAGATCTATGGAAATTCTCATTGCGAAAGTCGACAAACGGAGCAGTGACGAGGAGATTCTGCAGTCTCTGCTCAATGATCCAGCTTGCGATGGCATACATCTATCTCCGAGCCTTGTTGAAGGGTTGCTCCATCGGTTTAAAGATGACTGGAAGTCTGCACTGGGAATATTCAAATGGGCCAGCTTGAATTCGAGCTTTAGGCACTCGCCAGGATCGTATGACATGATGGTAGACATATTGGGTAAGATGAAGCAAATGGGAAAGTTGAGAGACCTCTTGGAAGAAATGCGTGACGGCAACCTCATTACTCTCAATACTGTAGCTAAGGTAATGAGAAGGTTTGTCGGTGCTGGACAGTGGGAAGACGCTGTAAGGATGTTTGATGAGTTGCAGATTCTTGGGTTGGAGAAGAACACCGAATCCATGAACTTGTTGCTTGATAGCCTGTGCAAAGAGGGGTTTGTTGCACAGGCTAGGGAGATTTTCTTGGAGCTGAAGCAGCACATTGCTCCAAATGCTCACACGTTTAACATATTTATTCACGGATGGTGCAAAGTCCGTCGTGTAGACGAGGCGCGTTGGACGATCCAAGAGATGAAGGGACATGGCTGTCGCCCTTGTGTTATCAGTTTTTCCACCATCATCCAATGCTATTGCCATGAAGGGAATTTCGGCAGCGCCTATGAGGTTCTTGATGAAATGCAAGCTCATGGTTGCTCCCCCAATGTGGTCACTTTTACTACTGTCATGTCCGCATTGGCGAAGGCGGAAGAATTTGAGCAAGCATTGAAAATAGTTGAGAGAATGAGGTCCGTTGGATGTAGACCTGATACGCTTTTCTACAATTCGCTCATTTACACACTGGGGAGAGCGGGCAGAGTAGATGATGCTGCCTATGTATTCGAGGTGGCAATGCCTAATGATGGTGTTGCCCCAAATACATCCACCTATAATTCAATGATTTCTATGTTTTGTCATTATGCACAAGAGAACAAAGCTTTTGGCATACTGAAGGGGATGGAAGATTCAGGTTGTAAGCCTGATCTTCAGACTTACCACCCAATGATCAAATCATGCTTTAAAGCTGGGAAAATAGGATAG 1185 0.4574 MLLRPRSFRSPLASSGDCWHKEQCQDLTRSMEILIAKVDKRSSDEEILQSLLNDPACDGIHLSPSLVEGLLHRFKDDWKSALGIFKWASLNSSFRHSPGSYDMMVDILGKMKQMGKLRDLLEEMRDGNLITLNTVAKVMRRFVGAGQWEDAVRMFDELQILGLEKNTESMNLLLDSLCKEGFVAQAREIFLELKQHIAPNAHTFNIFIHGWCKVRRVDEARWTIQEMKGHGCRPCVISFSTIIQCYCHEGNFGSAYEVLDEMQAHGCSPNVVTFTTVMSALAKAEEFEQALKIVERMRSVGCRPDTLFYNSLIYTLGRAGRVDDAAYVFEVAMPNDGVAPNTSTYNSMISMFCHYAQENKAFGILKGMEDSGCKPDLQTYHPMIKSCFKAGKIG* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1752 394 Pfam PPR repeat family 340 389 IPR002885 -
Dod01g1752 394 Pfam PPR repeat family 234 283 IPR002885 -
Dod01g1752 394 TIGRFAM PPR: pentatricopeptide repeat domain 309 342 IPR002885 -
Dod01g1752 394 TIGRFAM PPR: pentatricopeptide repeat domain 344 376 IPR002885 -
Dod01g1752 394 TIGRFAM PPR: pentatricopeptide repeat domain 237 271 IPR002885 -
Dod01g1752 394 TIGRFAM PPR: pentatricopeptide repeat domain 272 306 IPR002885 -
Dod01g1752 394 TIGRFAM PPR: pentatricopeptide repeat domain 202 234 IPR002885 -
Dod01g1752 394 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 269 IPR002885 -
Dod01g1752 394 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Dod01g1752 394 PANTHER OS02G0601600 PROTEIN 15 393 - -
Dod01g1752 394 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Dod01g1752 394 Pfam PPR repeat 100 126 IPR002885 -
Dod01g1752 394 Pfam PPR repeat 169 195 IPR002885 -
Dod01g1752 394 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 340 IPR002885 -
Dod01g1752 394 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 15 393 - -
Dod01g1752 394 Gene3D Tetratricopeptide repeat domain 332 394 IPR011990 GO:0005515
Dod01g1752 394 Gene3D Tetratricopeptide repeat domain 61 194 IPR011990 GO:0005515
Dod01g1752 394 Gene3D Tetratricopeptide repeat domain 195 263 IPR011990 GO:0005515
Dod01g1752 394 Gene3D Tetratricopeptide repeat domain 264 331 IPR011990 GO:0005515
Dod01g1752 394 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Dod01g1752 394 Pfam PPR repeat 197 221 IPR002885 -
Dod01g1752 394 Pfam PPR repeat 301 330 IPR002885 -
Dod01g1752 394 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 196 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1752 Dod-Chr1 51115645 51121802 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1752 138 391 Miscellaneous Gene Families AT4G11690 24.809 1.30e-22 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1752 - - adu:107494799 642.884