LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod01g0870	ATGGCCATGTTGAAGAACTACAGTACTCTTTGCTCCGGAGCAACCGGTTTTCCGGTTTTGCCCTCCAACAACACCAGGAATCTGCACTGGAAGCCTACACAAGCTGCTTTGACTTCCAGCTTCCACCTCCCAATGCGCAGCTTTGAGGTAAAAAATAGGACTTCCACAGATGACATAAAGTTCCTGAGATTGATTACTGCTATTAAAACACCGTACCTACCAGACGGTCGATTTGATCTTGAAGCATACGATGACTTGGTGAATCTGCAGATTGACAATGGAGCTGAAGGTGTCATTGTTGGTGGCACAACTGGAGAAGGCCAATTAATGAGCTGGGACGAGCACATAATGCTTATTGGTCACACAGTGAACTGTTTTGGTGGGAAAGTTAAGGTTATAGGAAACACTGGAAGCAACTCCACCAGGGAAGCAATTCATGCCACAGAGCAAGGTTTCGCTGTTGGGATGCATGCTGCACTTCACATAAACCCTTACTATGGCAAAACCTCCTTGGATGGCATGATCTCTCACTTTGATACAGTGCTTTCCATGGGGCCTACCGTCATATACAATGTGCCTTCAAGGACTGGTCAAGACATTCCTCCAAAGGTAATTCAAACCTTAGCACAAAGTGCTAGTTTGGCTGGTGTCAAAGAATGTGTAGGAAATGACAGGATCAAACAATATACAGATGACGGTATTGTTGTGTGGAGTGGGAATGATGATCAATGTCATGATGCTCGATGGGGTTATGGGGCTACTGGGGTGATATCTGTCGCAAGCAACCTGGTTCCTGGTTTAATGCGAGAACTCATGTTTGGGGGTGAGAATCCGGAACTGAATTCGAAGATCATGCCTCTGATTGAATGGCTTTTCTATGAGCCTAACCCCATTGGTTTGAACACAGCTCTTGCTCAACTTGGGGTTGTTAGGCCAGTTTTCAGGCTACCATATGTACCTCTCCCTGTGGAGAAAAGGATAAAGTTTGTCAATTTGGTGAAGGAAATTGGTAGAGAGCATTTTGTTGGAGAAAAAGATGTTAAGGTTCTTGATGACAATGACTTTACCTTAATTGGTCGTCATTAA	1086	0.4457	MAMLKNYSTLCSGATGFPVLPSNNTRNLHWKPTQAALTSSFHLPMRSFEVKNRTSTDDIKFLRLITAIKTPYLPDGRFDLEAYDDLVNLQIDNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLDGMISHFDTVLSMGPTVIYNVPSRTGQDIPPKVIQTLAQSASLAGVKECVGNDRIKQYTDDGIVVWSGNDDQCHDARWGYGATGVISVASNLVPGLMRELMFGGENPELNSKIMPLIEWLFYEPNPIGLNTALAQLGVVRPVFRLPYVPLPVEKRIKFVNLVKEIGREHFVGEKDVKVLDDNDFTLIGRH*	362

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod01g0870	361	CDD	DHDPS	61	333	IPR005263	GO:0008840\|GO:0009089
	Dod01g0870	361	Gene3D	Aldolase class I	55	361	IPR013785	-
	Dod01g0870	361	TIGRFAM	dapA: 4-hydroxy-tetrahydrodipicolinate synthase	64	332	IPR005263	GO:0008840\|GO:0009089
	Dod01g0870	361	SMART	DHDPS_2	60	337	IPR002220	GO:0016829
	Dod01g0870	361	PRINTS	Dihydrodipicolinate synthase signature	185	202	IPR002220	GO:0016829
	Dod01g0870	361	PRINTS	Dihydrodipicolinate synthase signature	94	115	IPR002220	GO:0016829
	Dod01g0870	361	PRINTS	Dihydrodipicolinate synthase signature	162	178	IPR002220	GO:0016829
	Dod01g0870	361	PRINTS	Dihydrodipicolinate synthase signature	130	148	IPR002220	GO:0016829
	Dod01g0870	361	ProSitePatterns	Dihydrodipicolinate synthase signature 2.	190	220	IPR020625	GO:0016829
	Dod01g0870	361	ProSitePatterns	Dihydrodipicolinate synthase signature 1.	97	114	IPR020624	GO:0016829
	Dod01g0870	361	SUPERFAMILY	Aldolase	64	336	-	-
	Dod01g0870	361	Hamap	4-hydroxy-tetrahydrodipicolinate synthase [dapA].	60	335	IPR005263	GO:0008840\|GO:0009089
	Dod01g0870	361	PANTHER	4-HYDROXY-TETRAHYDRODIPICOLINATE SYNTHASE, CHLOROPLASTIC	23	360	-	-
	Dod01g0870	361	Pfam	Dihydrodipicolinate synthetase family	60	335	IPR002220	GO:0016829
	Dod01g0870	361	PANTHER	DIHYDRODIPICOLINATE SYNTHASE	23	360	IPR002220	GO:0016829

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod01g0870	Dod-Chr1	15957318	15960783	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod01g0870	K01714		-	gmx:100788930	616.305

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod01g0870	01	15957318	15960783	Dod01g0870	01	15957318	15960783	ECH
	Dod01g0870	01	15957318	15960783	Dod07g1791	07	46861283	46864337	PCT