Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1491 ATGGAGACTCCGCAGCAAGGAGGGGTGGTGAAGAAGAAGGAGACGAGGGGTCGGAAGCCCAAGCCCAAGGACGACAAGAAGGACGACCAGCAGCAACATAGCAAGACCCCTAAGGAAACCAAGAAATCTCATCATCCTCCCACCGTCGACGAGAAGTACACCCAGTGGAAGTCCCTCGTTCCTGTCCTCTATGACTGGCTCGCTAATCACAACCTCGTTTGGCCCTCTCTTTCTTGCCGGTGGGGTCCTCAACTTGAGCAAGCTACTTACAAGAATCGCCAACGTCTCTACCTTTCTGAGCAGACTGATGGTAGTGTTCCAAACACTCTGGTCATCGCAAACTGTGAGGTTGTGAAGCCTAGGGTTGCAGCTGCAGAACACATTTCGCAGTTTAATGAAGAGGCACGTTCACCATTTGTGAAGAAGTATAAGACCATCATACATCCGGGAGAGGTTAACAGAATTAGGGAATTGCCAACAAATTCTAAGATAGTGGCTACTCATACAGATAGTCCTGATGTCCTCATCTGGGACGTTGAATCTCAGCCCAATCGTCATGCTGTCCTTGGCGCTACAAACTCTCGTCCAGATCTGATATTGACTGGACACCAAGATAATGCAGAATTTGCTCTTGCAATGTGCCCAACGGAACCCTATGTGCTTTCTGGAGGAAAGGACAAATCGGTAGTTTTGTGGAGTATTCAGGATCATATAACGTCTGCTACTGCAGACCATAAAGCGAGTGAGTCAAATGCCAAACAGAACTCTAAATCTGGGGAAGGCAATGATAAAACTACCGATGGGCCATCTGTTGGACCACGAGGCATCTTTCATGGGCATGAGGATACTGTTGAAGATGTGACTTTTTGCCCCTTTAGTGCGCAGGAGTTCTGTAGTGTTGGGGATGATTCTTGTCTCATATTATGGGATGCACGTGTTGGCTCTAGTCCTGTGGTTAAGGTTGAAAAGGCTCATAATGCTGATCTTCACTGTGTTGACTGGAATCCCAATGATGTTAATCTTATTCTAACTGGGTCAGCAGATAATTCTGTTCGCATGTTTGACCGGCGTAATCTTACCTCTAATGGAGTTGGGTCACCTATCCATAAATTCGAAGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCCCCAGACAAATCTTCTGTATTTGGAAGTTCTGCAGAAGATGGTCTCTTAAACATTTGGGATTATGAGAAGATTGGTAAAAAAACAGAGCGATCTGGAAAATCACAAAGTTCTCCAGGGTTGTTGTTCCAACATGCTGGCCATAGAGACAAGGTTGTTGACTTTCACTGGAATGCATATGATCCATGGACAATTGTTAGTGTGTCAGACGACTGTGATAGTACTGGTGGTGGGGGAACATTGCAGATATGGCGCATGAGTGATTTGATCTACCGACCCGAAGAGGAGGTTTTGGCGGAGCTAGAGAAATTTAAGTCTCATGTGGTAGAATGTGCCTCTAAGTCTGAAAAGTGA 1503 0.4611 METPQQGGVVKKKETRGRKPKPKDDKKDDQQQHSKTPKETKKSHHPPTVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPTNSKIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSATADHKASESNAKQNSKSGEGNDKTTDGPSVGPRGIFHGHEDTVEDVTFCPFSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPNDVNLILTGSADNSVRMFDRRNLTSNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKIGKKTERSGKSQSSPGLLFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCDSTGGGGTLQIWRMSDLIYRPEEEVLAELEKFKSHVVECASKSEK 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1491 500 MobiDBLite consensus disorder prediction 1 49 - -
Dere14g1491 500 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 322 355 - -
Dere14g1491 500 PANTHER WD40 REPEAT FAMILY 46 483 - -
Dere14g1491 500 MobiDBLite consensus disorder prediction 7 49 - -
Dere14g1491 500 MobiDBLite consensus disorder prediction 242 278 - -
Dere14g1491 500 SMART WD40_4 193 233 IPR001680 GO:0005515
Dere14g1491 500 SMART WD40_4 139 178 IPR001680 GO:0005515
Dere14g1491 500 SMART WD40_4 421 468 IPR001680 GO:0005515
Dere14g1491 500 SMART WD40_4 364 404 IPR001680 GO:0005515
Dere14g1491 500 SMART WD40_4 270 310 IPR001680 GO:0005515
Dere14g1491 500 SMART WD40_4 315 355 IPR001680 GO:0005515
Dere14g1491 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 371 406 IPR001680 GO:0005515
Dere14g1491 500 SUPERFAMILY WD40 repeat-like 138 485 IPR036322 GO:0005515
Dere14g1491 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 355 IPR001680 GO:0005515
Dere14g1491 500 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 51 117 IPR022052 -
Dere14g1491 500 Pfam WD domain, G-beta repeat 365 404 IPR001680 GO:0005515
Dere14g1491 500 Pfam WD domain, G-beta repeat 198 233 IPR001680 GO:0005515
Dere14g1491 500 Pfam WD domain, G-beta repeat 323 355 IPR001680 GO:0005515
Dere14g1491 500 Pfam WD domain, G-beta repeat 275 310 IPR001680 GO:0005515
Dere14g1491 500 Gene3D - 23 486 IPR015943 GO:0005515
Dere14g1491 500 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 371 406 - -
Dere14g1491 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 277 319 IPR001680 GO:0005515
Dere14g1491 500 MobiDBLite consensus disorder prediction 242 265 - -
Dere14g1491 500 FunFam WD-40 repeat-containing protein MSI4 24 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1491 Dere-ChrDere14 15923617 15930164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1491 277 439 Miscellaneous Gene Families AT5G08390 25.301 6.39e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere14g1491 14 15923617 15930164 Dere14g1491 14 15923617 15930164 ECH