Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0623 ATGGGGGAGAGTACAGTGGGTGGTGCTTCTTTGCCTTCGGGTCCAGACGCAAAGAAGAGGAGGGTCACCTATTTCTACGAACCCACCATCGGCGATTACTACTATGGCCAAGGCCACCCTATGAAACCCCATCGGATTCGAATGGCCCACAATCTCATCGTCCATTATTCCCTCCATCGCCGCATGGAAATCAACCGTCCGTTCCCTGCCGCCCCCGAGGACATCCGTCGCTTCCACACCGACGAATATGTAGACTTCCTCTCCACCGTATCGCCGGAGACCCTCGGTGAGAACACATTCTCTCGTCAGCTCAAGCGCTTCAATGTTGGCGAGGACTGTCCCGTCTTTGATGGCTTATTCAATTTTTGTCAGGCCTCTGCTGGTGGTTCTATTGGTGCCGCCGTCAAGTTGAACCGTGGCGATGCTGATATAGCAATCAATTGGGCTGGTGGCTTGCACCATGCTAAGAAGTCTGAGGCTTCCGGGTTTTGTTACGTCAATGATATTGTCCTTGGCATTCTTGAGCTTCTCAAGGTTCACAGGCGTGTACTGTATGTTGACATTGATGTCCACCACGGAGATGGTGTTGAGGAGGCGTTTTACACAACTGATAGAGTGATGACAGTTTCTTTTCATAAGTTTGGGGATTTTTTCCCAGGCACTGGGCACATTAAAGACGTTGGGGTGGGCCCAGGGAAGAATTATGCTTTAAATGTCCCATTGAATGATGGGATGGATGATGAGAATTTCCGTGGTCTGTTTCGCCCCATCATTCAGAAAGTCATGGAGGTTTATCAACCTGATGCAGTTGTTCTTCAATGTGGTGCTGATTCGTTGTCTGGTGACAGGCTAGGTTGTTTTAATTTGTCTGTGAAGGGTCATGCAGATTGCCTTCGTTTCCTTAGATCTTTCAATGTTCCTCTGATGGTCTTGGGTGGGGGAGGATATACAATTCGGAATGTTGCTCGTTGCTGGTGTTATGAGACAGCTGTGGCTGTAGGAGTGGAACCTGATAATAAGTTGCCTTACAATGAATATTTTGAGTATTTCGGCCCAGATTACACCCTTCATGTTGATCCATGCAACATGGAGAACCTAAACTCACCGAAGGATATGGAAAAAATAAGGATCACACTACTAGAACAGCTTTCCAGACTTCCTCATGCACCCAGTGCACCTTTCCAGACGACACCATCCACCGTTGAAGTTCCAGAAGAGGCAGAAGAGGACATGGATCGAAGACCAAAACGTCGCATATGGAGCGGTGAAGATTATGACTCTGACCGTGATGAAGATGAGAAGGCCAGTTCAAAATGTTCAAATTTCACTGCCCAAACAAGGGATGTTCCGGATGAGATGGAAGAAGAAAAGCCAGAAGTGCATCCTTCATCTTGA 1395 0.4789 MGESTVGGASLPSGPDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRRMEINRPFPAAPEDIRRFHTDEYVDFLSTVSPETLGENTFSRQLKRFNVGEDCPVFDGLFNFCQASAGGSIGAAVKLNRGDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGVGPGKNYALNVPLNDGMDDENFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYTLHVDPCNMENLNSPKDMEKIRITLLEQLSRLPHAPSAPFQTTPSTVEVPEEAEEDMDRRPKRRIWSGEDYDSDRDEDEKASSKCSNFTAQTRDVPDEMEEEKPEVHPSS 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0623 464 PIRSF HDAC_I_euk 7 462 IPR003084 GO:0004407|GO:0016575
Dere14g0623 464 MobiDBLite consensus disorder prediction 388 464 - -
Dere14g0623 464 PANTHER HISTONE DEACETYLASE 2-RELATED 9 344 - -
Dere14g0623 464 MobiDBLite consensus disorder prediction 448 464 - -
Dere14g0623 464 SUPERFAMILY Arginase/deacetylase 20 385 IPR023696 -
Dere14g0623 464 PRINTS Histone deacetylase signature 169 185 IPR003084 GO:0004407|GO:0016575
Dere14g0623 464 PRINTS Histone deacetylase signature 74 92 IPR003084 GO:0004407|GO:0016575
Dere14g0623 464 PRINTS Histone deacetylase signature 41 58 IPR003084 GO:0004407|GO:0016575
Dere14g0623 464 PRINTS Histone deacetylase signature 128 148 IPR003084 GO:0004407|GO:0016575
Dere14g0623 464 PRINTS Histone deacetylase signature 107 124 IPR003084 GO:0004407|GO:0016575
Dere14g0623 464 PRINTS Histone deacetylase signature 228 241 IPR003084 GO:0004407|GO:0016575
Dere14g0623 464 PRINTS Histone deacetylase signature 245 263 IPR003084 GO:0004407|GO:0016575
Dere14g0623 464 Pfam Histone deacetylase domain 39 330 IPR023801 -
Dere14g0623 464 MobiDBLite consensus disorder prediction 407 437 - -
Dere14g0623 464 FunFam Histone deacetylase 18 397 - -
Dere14g0623 464 Gene3D Histone deacetylase domain 18 393 IPR037138 -
Dere14g0623 464 CDD HDAC_classI 25 332 - -
Dere14g0623 464 PRINTS Histone deacetylase superfamily signature 182 197 IPR000286 -
Dere14g0623 464 PRINTS Histone deacetylase superfamily signature 150 173 IPR000286 -
Dere14g0623 464 PRINTS Histone deacetylase superfamily signature 267 277 IPR000286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0623 Dere-ChrDere14 6532586 6536085 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere14g0623 14 6532586 6536085 Dere14g0623 14 6532586 6536085 ECH