Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0599 ATGTTGAAGCTTGGGTATTCATTTCATCTTCTTCATCAAGTAAAGCCCCGATTTTTGCCCCCATGTCACACGCTCAATACCAAAATTCAATCGTCACCGGCGACGCCACCATTGGCGCAGGACGACGTCACCATTGCCAAACTATTTCTCGAATCAGACCCACAGTCCTTGTCCAAAACTCTAGAAAGAACAACTTTCCATTGGAATCCAGACCTAGTGGACAAGGTCCTCAAACGCCTATGGAACCATGGACCCAAAGCACTGCAATTTTTCAAGTACCTTGAACGCCAACCGACCTATACTCATTCCTCGTCGTCCTTTGATTACGCCATTGACATCGCTGCTCGTATGCGGGACTACAAGTCTGTTTGGACCCTGGTTTCTCGGATGCGAGCTTGCCGTATCGGACCAAGCCCTCGAACATTCGCGATCATTACTGAGAGATATGTTGCTGCTGGTAAAGCCGATAGAGCTGTAAAGATTTTTCTGTCAATGCACAAGCATGGTTGTCCTCAGGATTTGAATTCTTTTAATACGATTCTTGATATGTTGTGCAAGTCCAGACGAGTCGAGATGGCTTATAATTTGTTCAAGGTTTTCAGGGGTAGATTCAAGGCTGATCGTATTAGTTATAACATTATTGCAAATGGTTGGTGCTTGATTAAGCGAACACCCAAGGCATTGGAGGTGATGAAGGAGATGGTAGAAAGGGGATTGACTCCTACTTTATCTACGTATAATATATTGCTCAAAGGGTATTTTAGGACTGGGCAGCTGAAGGAAGCTTGGGATTTCTTCATGGAAATGAAGAAGAGGAAATGTGACATTGATGTTGTTACCTATACTACCATGGTTCATGGGTTTGGAGTTGTGGGTGAAATTAAGAAAGCTCGAAAGGTTTTTGATGATATGGTTAGGGAGGGTGTTCTTCCTTCAGTTGCAACATACAATGCTTTGATTCAAGTTTTATGCAAGAAGGATAATGTGGAAAATGCTATATTGGCCTTCGAAGAGATGTTGAGGAAGGGTTATATGCCTAATTCAGTTACTTACAACGTAATTATCAGAGGGTTGTGTCATACAGGTGACATGCAAAGGGCCATGGAGTTTATGGTGAGAATGGAGGAAGATGACTGTCAGCCAAATGTTCAGACGTATAACGTCATGATACGATACTTATGTGATGCTGGAGAGATTGATAAGGGTTTGAACATGTTTGAGAAGATGAGGAATTGGTCATGCTTGCCCAATCTGGACACGTACAACATTCTGATCAGTGCTATGTTTGTGAGGAAGAAATCAGATGATTTAGTGGTGGCTGGGAAGCTGTTATTGGAGATGATTGATAGAGGATTCCTGCCTCGAAAGTTTACTTTTAATCGAGTATTAAATGGGCTTCAGTTAACAGGCAATCAAGATTTTGCGAAGGAGATACTAAGGTCACAGAGTAGATGTGGCCGGGTTCCTCGTTATTTGAAACTATGA 1485 0.4256 MLKLGYSFHLLHQVKPRFLPPCHTLNTKIQSSPATPPLAQDDVTIAKLFLESDPQSLSKTLERTTFHWNPDLVDKVLKRLWNHGPKALQFFKYLERQPTYTHSSSSFDYAIDIAARMRDYKSVWTLVSRMRACRIGPSPRTFAIITERYVAAGKADRAVKIFLSMHKHGCPQDLNSFNTILDMLCKSRRVEMAYNLFKVFRGRFKADRISYNIIANGWCLIKRTPKALEVMKEMVERGLTPTLSTYNILLKGYFRTGQLKEAWDFFMEMKKRKCDIDVVTYTTMVHGFGVVGEIKKARKVFDDMVREGVLPSVATYNALIQVLCKKDNVENAILAFEEMLRKGYMPNSVTYNVIIRGLCHTGDMQRAMEFMVRMEEDDCQPNVQTYNVMIRYLCDAGEIDKGLNMFEKMRNWSCLPNLDTYNILISAMFVRKKSDDLVVAGKLLLEMIDRGFLPRKFTFNRVLNGLQLTGNQDFAKEILRSQSRCGRVPRYLKL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0599 494 Pfam PPR repeat 149 170 IPR002885 -
Dere14g0599 494 Pfam PPR repeat 176 198 IPR002885 -
Dere14g0599 494 Pfam PPR repeat 209 239 IPR002885 -
Dere14g0599 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Dere14g0599 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Dere14g0599 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Dere14g0599 494 Pfam PPR repeat family 311 360 IPR002885 -
Dere14g0599 494 Pfam PPR repeat family 245 288 IPR002885 -
Dere14g0599 494 Pfam PPR repeat family 381 428 IPR002885 -
Dere14g0599 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Dere14g0599 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Dere14g0599 494 NCBIfam pentatricopeptide repeat 279 312 IPR002885 -
Dere14g0599 494 NCBIfam pentatricopeptide repeat 176 198 IPR002885 -
Dere14g0599 494 NCBIfam pentatricopeptide repeat 315 347 IPR002885 -
Dere14g0599 494 NCBIfam pentatricopeptide repeat 245 277 IPR002885 -
Dere14g0599 494 NCBIfam pentatricopeptide repeat 209 242 IPR002885 -
Dere14g0599 494 NCBIfam pentatricopeptide repeat 385 417 IPR002885 -
Dere14g0599 494 NCBIfam pentatricopeptide repeat 349 383 IPR002885 -
Dere14g0599 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Dere14g0599 494 Gene3D Tetratricopeptide repeat domain 292 491 IPR011990 GO:0005515
Dere14g0599 494 Gene3D Tetratricopeptide repeat domain 46 186 IPR011990 GO:0005515
Dere14g0599 494 Gene3D Tetratricopeptide repeat domain 187 290 IPR011990 GO:0005515
Dere14g0599 494 PANTHER OS03G0856100 PROTEIN 75 428 - -
Dere14g0599 494 SUPERFAMILY HCP-like 191 344 - -
Dere14g0599 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 172 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0599 140 489 Miscellaneous Gene Families AT4G11690 28.286 2.91e-39 147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere14g0599 14 6315400 6316884 Dere14g0599 14 6315400 6316884 ECH