Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0542 ATGGCTGCAAATACTTCAAAGTTCATCAAATGCGTCACAGTTGGAGACGGAGCTGTAGGGAAGACCTGCATGCTTATTTGCTATACCAGCAATAAATTCCCCACTGACTATATCCCCACGGTGTTCGATAATTTCAGTGCAAATGTGGTCGTTGAGGGCACGACTGTCAATTTAGGCCTCTGGGACACTGCTGGGCAAGAGGATTACAACAGACTGAGGCCTTTGAGCTACAGAGGGGCAGATGTTTTTGTCTTGGCTTTCTCTTTAGTTAGTCGTGCAAGCTACGAGAATGTGTTGAAGAAGTGGATCCCTGAACTCCAGCATTTTGCCCCTGGCGTTCCAGTGGTATTAGTGGGCACCAAATTGGATCTCCGAGAAGATAAGCACTATTTGGCTGATCATCCTGGTCTGGTGCCTGTGACAACTGAGCAGGGTGAGGAACTCTGTAAACAGATTGGGGCTACCTATTACATTGAATGCAGCTCAAAAACTCAGCAGAATGTCAAGTCCGTGTTTGATGCTGCGATCAAGATGGTCATCAAACCTCCACAAAAACAGAACGAAAAGAAGAAAAAACCACGTCGAGGATGTCTACTGTCAGTAAACTCTTTCCATATGATGTATTACATTCTTGTTTTTTCAAGCTGTTTGTGTCCGTATTCCATAGACACTGAATCCTGCAGTTGGAATCATAGTCATGCTATTAATATCATGATTTTGTTGACATCCCAATGGCAGTTAAACGTCTTGTGTGGAAGGAGTCTTGTTTCGTCATAA 777 0.4402 MAANTSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHFAPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTEQGEELCKQIGATYYIECSSKTQQNVKSVFDAAIKMVIKPPQKQNEKKKKPRRGCLLSVNSFHMMYYILVFSSCLCPYSIDTESCSWNHSHAINIMILLTSQWQLNVLCGRSLVSS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0542 258 SMART ras_sub_4 6 182 - -
Dere14g0542 258 PRINTS Transforming protein P21 ras signature 49 71 - -
Dere14g0542 258 PRINTS Transforming protein P21 ras signature 111 124 - -
Dere14g0542 258 PRINTS Transforming protein P21 ras signature 9 30 - -
Dere14g0542 258 PRINTS Transforming protein P21 ras signature 157 179 - -
Dere14g0542 258 PRINTS Transforming protein P21 ras signature 32 48 - -
Dere14g0542 258 CDD Rop_like 8 180 - -
Dere14g0542 258 ProSiteProfiles small GTPase Rho family profile. 2 179 - -
Dere14g0542 258 PANTHER RHO FAMILY GTPASE 7 198 IPR003578 GO:0005525|GO:0007264
Dere14g0542 258 SMART rho_sub_3 11 182 IPR001806 GO:0003924|GO:0005525
Dere14g0542 258 NCBIfam small GTP-binding protein domain 7 173 IPR005225 GO:0005525
Dere14g0542 258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 179 IPR027417 -
Dere14g0542 258 Gene3D - 2 200 IPR027417 -
Dere14g0542 258 ProSiteProfiles small GTPase Rab1 family profile. 4 216 - -
Dere14g0542 258 ProSiteProfiles small GTPase Ras family profile. 4 238 IPR001806 GO:0003924|GO:0005525
Dere14g0542 258 SMART rab_sub_5 9 182 - -
Dere14g0542 258 FunFam Rac-like GTP-binding protein 3 2 200 - -
Dere14g0542 258 Pfam Ras family 10 179 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0542 Dere-ChrDere14 5542039 5544845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0542 5 194 EF-hand Containing Proteins AT5G27540 24.742 1.07e-15 74.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere14g0542 14 5542039 5544845 Dere14g0542 14 5542039 5544845 ECH